myRT

myRT report for GCA_003347665.1_ASM334766v1

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Seq: QDGA01000116.1 Microvirga sp. CCBAU 65841 65841_scaffold116, whole genome shotgun sequence (14058 bp)
Overview 1 RT 1: 126-3808 bp Neighborhood of RT #1 [126, 3808] RVT_N RVT-GII GIIM HNHc COG2085 Feature: gene Location: 126-1790 bp Feature: RT Description: RVT_N Location: 171-411 bp Feature: RT Description: RVT_N Location: 1 71 -41 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 465-1125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 465-1 1 25 bp Feature: domain Description: GIIM Note: maturase Location: 1179-1410 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 79-1 41 0 bp Feature: domain Description: HNHc Note: nucleases Location: 1587-1758 bp Feature: domain Description: HNHc Note: nucleases Location: 1 587-1 758 bp Feature: gene Location: 2702-3364 bp Feature: domain Description: COG2085 Location: 2705-3308 bp Feature: domain Description: COG2085 Location: 2705-3308 bp Feature: gene Location: 3632-3808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), COG2085 (Predicted dinucleotide-binding enzyme )

Seq: QDGA01000118.1 Microvirga sp. CCBAU 65841 65841_scaffold118, whole genome shotgun sequence (13717 bp)
Overview 1 RT 1: 647-3211 bp Neighborhood of RT #1 [647, 3216] RVT_N RVT-GII GIIM HNHc GATase1_Hsp31_like CC3_like_SDR_a Feature: gene Location: 647-2311 bp Feature: RT Description: RVT_N Location: 692-932 bp Feature: RT Description: RVT_N Location: 692 -932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 986-1646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 986-1646 bp Feature: domain Description: GIIM Note: maturase Location: 1700-1931 bp Feature: domain Description: GIIM Note: maturase Location: 1700-1931 bp Feature: domain Description: HNHc Note: nucleases Location: 2108-2279 bp Feature: domain Description: HNHc Note: nucleases Location: 2 108-2 2 79 bp Feature: gene Location: 2517-2975 bp Feature: domain Description: GATase1_Hsp31_like Location: 2523-2961 bp Feature: domain Description: GATase1_Hsp31_like Location: 2 52 3-2 961 bp Feature: gene Location: 2989-3216 bp Feature: domain Description: CC3_like_SDR_a Location: 3004-3211 bp Feature: domain Description: CC3_like_SDR_a Location: 3004-32 11 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GATase1_Hsp31_like (cd03141), CC3_like_SDR_a (cd05250), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: QDGA01000156.1 Microvirga sp. CCBAU 65841 65841_scaffold156, whole genome shotgun sequence (9046 bp)
Overview 1 RT 1: 6419-8750 bp Neighborhood of RT #1 [6419, 8971] PHA02517 RVT-GII GIIM Feature: gene Location: 6419-6904 bp Feature: domain Description: PHA02517 Location: 6539-6830 bp Feature: domain Description: PHA02517 Location: 653 9-683 0 bp Feature: gene Location: 7094-7348 bp Feature: gene Location: 7442-8971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7715-8450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7715-8450 bp Feature: domain Description: GIIM Note: maturase Location: 8522-8750 bp Feature: domain Description: GIIM Note: maturase Location: 8522-8750 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: QDGA01000166.1 Microvirga sp. CCBAU 65841 65841_scaffold166, whole genome shotgun sequence (7768 bp)
Overview 1 RT 1: 1875-6830 bp Neighborhood of RT #1 [1875, 6838] DDE_3 RVT-GII PHA02517 Feature: gene Location: 1875-2429 bp Feature: domain Description: DDE_3 Location: 1932-2343 bp Feature: domain Description: DDE_3 Location: 1932-234 3 bp Feature: gene Location: 2493-2648 bp Feature: gene Location: 2949-3914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3303-3750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3303-3750 bp Feature: gene Location: 5127-5789 bp Feature: gene Location: 6107-6838 bp Feature: domain Description: PHA02517 Location: 6173-6830 bp Feature: domain Description: PHA02517 Location: 6173-6830 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)

Seq: QDGA01000185.1 Microvirga sp. CCBAU 65841 65841_scaffold185, whole genome shotgun sequence (5119 bp)
Overview 1 RT 1: 1313-4819 bp Neighborhood of RT #1 [1313, 4819] RhaT PHA02517 RVT-GII GIIM Feature: gene Location: 1313-2230 bp Feature: domain Description: RhaT Location: 1373-2192 bp Feature: domain Description: RhaT Location: 1373-2192 bp Feature: gene Location: 2410-2862 bp Feature: domain Description: PHA02517 Location: 2419-2827 bp Feature: domain Description: PHA025 17 Location: 2419-2827 bp Feature: gene Location: 2942-4471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3215-3950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3215 -395 0 bp Feature: domain Description: GIIM Note: maturase Location: 4022-4250 bp Feature: domain Description: GIIM Note: maturase Location: 4022-425 0 bp Feature: gene Location: 4565-4819 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RhaT (TIGR00776), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: QDGA01000201.1 Microvirga sp. CCBAU 65841 65841_scaffold201, whole genome shotgun sequence (4168 bp)
Overview 1 RT 1: 76-2578 bp Neighborhood of RT #1 [76, 2652] RVT-GII GIIM PHA02517 Feature: gene Location: 76-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 349-1084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 349-1084 bp Feature: domain Description: GIIM Note: maturase Location: 1156-1384 bp Feature: domain Description: GIIM Note: maturase Location: 1156 -1384 bp Feature: gene Location: 1699-1953 bp Feature: gene Location: 2143-2652 bp Feature: domain Description: PHA02517 Location: 2209-2578 bp Feature: domain Description: PHA02517 Location: 2209-2578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: QDGA01000216.1 Microvirga sp. CCBAU 65841 65841_scaffold216, whole genome shotgun sequence (2651 bp)
Overview 1 RT 1: 2-2351 bp Neighborhood of RT #1 [2, 2351] PHA02517 RVT-GII GIIM Feature: gene Location: 2-445 bp Feature: domain Description: PHA02517 Location: 41-446 bp Feature: domain Description: PHA02517 Location: 41-446 bp Feature: gene Location: 474-2003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 747-1482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 47 -1482 bp Feature: domain Description: GIIM Note: maturase Location: 1554-1782 bp Feature: domain Description: GIIM Note: maturase Location: 1554-17 82 bp Feature: gene Location: 2097-2351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: QDGA01000007.1 Microvirga sp. CCBAU 65841 65841_scaffold7, whole genome shotgun sequence (149951 bp)
Overview 1 RT 1: 145253-149794 bp Neighborhood of RT #1 [145253, 149826] RhaT WcaG RVT_N RVT-GII GIIM HNHc Feature: gene Location: 145253-146149 bp Feature: domain Description: RhaT Location: 145259-146102 bp Feature: domain Description: RhaT Location: 145259-146102 bp Feature: gene Location: 146504-147397 bp Feature: domain Description: WcaG Location: 146534-147113 bp Feature: domain Description: WcaG Location: 146534-147113 bp Feature: gene Location: 148162-149826 bp Feature: RT Description: RVT_N Location: 148207-148447 bp Feature: RT Description: RVT_N Location: 148 207-148 447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148501-149161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148 501-149161 bp Feature: domain Description: GIIM Note: maturase Location: 149215-149446 bp Feature: domain Description: GIIM Note: maturase Location: 149215-149446 bp Feature: domain Description: HNHc Note: nucleases Location: 149623-149794 bp Feature: domain Description: HNHc Note: nucleases Location: 149623-149794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RhaT (TIGR00776), WcaG (COG0451), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: QDGA01000074.1 Microvirga sp. CCBAU 65841 65841_scaffold74, whole genome shotgun sequence (24258 bp)
Overview 1 RT 1: 19761-23580 bp Neighborhood of RT #1 [19761, 23612] Zn_ADH7 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 19761-20771 bp Feature: domain Description: Zn_ADH7 Location: 19764-20769 bp Feature: domain Description: Zn_ADH7 Location: 19 764-20769 bp Feature: gene Location: 20908-21684 bp Feature: gene Location: 21948-23612 bp Feature: RT Description: RVT_N Location: 21993-22233 bp Feature: RT Description: RVT_N Location: 219 9 3-22233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22287-22947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22287-229 47 bp Feature: domain Description: GIIM Note: maturase Location: 23001-23232 bp Feature: domain Description: GIIM Note: maturase Location: 23001-23232 bp Feature: domain Description: HNHc Note: nucleases Location: 23409-23580 bp Feature: domain Description: HNHc Note: nucleases Location: 23409 -23580 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_ADH7 (cd08261), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)