myRT

myRT report for GCA_003349325.1_ASM334932v1

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Seq: QECD01000015.1 Vibrio cholerae strain OYP4D09 Vc_OYP4D09_Contig_15, whole genome shotgun sequence (9523 bp)
Overview 1 RT 1: 676-6012 bp Neighborhood of RT #1 [676, 6062] RVT-Retrons TIR_2 SMI1_KNR4 Feature: gene Location: 676-1434 bp Feature: gene Location: 1692-3002 bp Feature: gene Location: 3365-4960 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3617-4229 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 361 7-4229 bp Feature: domain Description: TIR_2 Location: 4565-4949 bp Feature: domain Description: TIR_2 Location: 4565-4949 bp Feature: gene Location: 4995-5501 bp Feature: gene Location: 5646-6062 bp Feature: domain Description: SMI1_KNR4 Location: 5661-6012 bp Feature: domain Description: SMI1 _KNR4 Location: 5661 -601 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, TIR_2 (pfam13676), SMI1_KNR4 (smart00860)

Seq: QECD01000034.1 Vibrio cholerae strain OYP4D09 Vc_OYP4D09_Contig_34, whole genome shotgun sequence (2092 bp)
Overview 1 RT 1: 3-1843 bp Neighborhood of RT #1 [3, 2022] RVT-GII GIIM Feature: gene Location: 3-542 bp Feature: gene Location: 808-2022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 952-1573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 952 -1573 bp Feature: domain Description: GIIM Note: maturase Location: 1624-1843 bp Feature: domain Description: GIIM Note: maturase Location: 162 4-1843 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QECD01000005.1 Vibrio cholerae strain OYP4D09 Vc_OYP4D09_Contig_5, whole genome shotgun sequence (278484 bp)
Overview 1 RT 1: 116080-124089 bp Neighborhood of RT #1 [116080, 124089] carB RVT-Retrons PRK10621 Feature: gene Location: 116080-119310 bp Feature: domain Description: carB Location: 116083-119281 bp Feature: domain Description: carB Location: 116083 -119281 bp Feature: gene Location: 119400-119882 bp Feature: gene Location: 120405-122240 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 120540-121236 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 120540-12123 6 bp Feature: gene Location: 122808-123593 bp Feature: domain Description: PRK10621 Location: 122817-123588 bp Feature: domain Description: PRK10621 Location: 122817-123 588 bp Feature: gene Location: 123916-124089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT carB (PRK12815), RVT-Retrons, PRK10621 (hypothetical protein; Provisional)