myRT

myRT report for GCA_003349395.1_ASM334939v1

Download annotations/find similar RTs

Seq: QECL01000024.1 Vibrio cholerae strain OYP2E03 Vc_OYP2E03_Contig_24, whole genome shotgun sequence (193480 bp)
Overview 1 RT 1: 70135-78144 bp Neighborhood of RT #1 [70135, 78144] carB RVT-Retrons PRK10621 Feature: gene Location: 70135-73365 bp Feature: domain Description: carB Location: 70138-73336 bp Feature: domain Description: carB Location: 701 38-73336 bp Feature: gene Location: 73455-73937 bp Feature: gene Location: 74460-76295 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74595-75291 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74595-75291 bp Feature: gene Location: 76863-77648 bp Feature: domain Description: PRK10621 Location: 76872-77643 bp Feature: domain Description: PRK1 0621 Location: 76872-77643 bp Feature: gene Location: 77971-78144 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT carB (PRK12815), RVT-Retrons, PRK10621 (hypothetical protein; Provisional)

Seq: QECL01000031.1 Vibrio cholerae strain OYP2E03 Vc_OYP2E03_Contig_31, whole genome shotgun sequence (2092 bp)
Overview 1 RT 1: 71-2090 bp Neighborhood of RT #1 [71, 2090] RVT-GII GIIM Feature: gene Location: 71-1354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284-905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 84-905 bp Feature: domain Description: GIIM Note: maturase Location: 956-1175 bp Feature: domain Description: GIIM Note: maturase Location: 956-1175 bp Feature: gene Location: 1551-2090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QECL01000072.1 Vibrio cholerae strain OYP2E03 Vc_OYP2E03_Contig_72, whole genome shotgun sequence (5759 bp)
Overview 1 RT 1: 62-5398 bp Neighborhood of RT #1 [62, 5448] RVT-Retrons TIR_2 SMI1_KNR4 Feature: gene Location: 62-820 bp Feature: gene Location: 1078-2388 bp Feature: gene Location: 2751-4346 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3003-3615 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 003 -3 615 bp Feature: domain Description: TIR_2 Location: 3951-4335 bp Feature: domain Description: TIR_2 Location: 3 951-43 3 5 bp Feature: gene Location: 4381-4887 bp Feature: gene Location: 5032-5448 bp Feature: domain Description: SMI1_KNR4 Location: 5047-5398 bp Feature: domain Description: SMI1_KNR4 Location: 5047-53 98 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, TIR_2 (pfam13676), SMI1_KNR4 (smart00860)