myRT

myRT report for GCA_003349445.1_ASM334944v1

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Seq: QECO01000003.1 Vibrio cholerae strain OYP2A12 Vc_OYP2A12_Contig_18, whole genome shotgun sequence (278482 bp)
Overview 1 RT 1: 116078-124087 bp Neighborhood of RT #1 [116078, 124087] carB RVT-Retrons PRK10621 Feature: gene Location: 116078-119308 bp Feature: domain Description: carB Location: 116081-119279 bp Feature: domain Description: carB Location: 1 1 6081 -1 1 9279 bp Feature: gene Location: 119398-119880 bp Feature: gene Location: 120403-122238 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 120538-121234 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 20538-1 21 234 bp Feature: gene Location: 122806-123591 bp Feature: domain Description: PRK10621 Location: 122815-123586 bp Feature: domain Description: PRK1 0621 Location: 1 2281 5-1 23586 bp Feature: gene Location: 123914-124087 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT carB (PRK12815), RVT-Retrons, PRK10621 (hypothetical protein; Provisional)

Seq: QECO01000059.1 Vibrio cholerae strain OYP2A12 Vc_OYP2A12_Contig_36, whole genome shotgun sequence (2092 bp)
Overview 1 RT 1: 3-1843 bp Neighborhood of RT #1 [3, 2022] RVT-GII GIIM Feature: gene Location: 3-542 bp Feature: gene Location: 808-2022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 952-1573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 952 -1573 bp Feature: domain Description: GIIM Note: maturase Location: 1624-1843 bp Feature: domain Description: GIIM Note: maturase Location: 162 4-1843 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QECO01000036.1 Vibrio cholerae strain OYP2A12 Vc_OYP2A12_Contig_6, whole genome shotgun sequence (11051 bp)
Overview 1 RT 1: 60-5396 bp Neighborhood of RT #1 [60, 5446] RVT-Retrons TIR_2 SMI1_KNR4 Feature: gene Location: 60-818 bp Feature: gene Location: 1076-2386 bp Feature: gene Location: 2749-4344 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3001-3613 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 001-3 613 bp Feature: domain Description: TIR_2 Location: 3949-4333 bp Feature: domain Description: TIR_2 Location: 3 949-43 3 3 bp Feature: gene Location: 4379-4885 bp Feature: gene Location: 5030-5446 bp Feature: domain Description: SMI1_KNR4 Location: 5045-5396 bp Feature: domain Description: SMI1_KNR4 Location: 5045-53 96 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, TIR_2 (pfam13676), SMI1_KNR4 (smart00860)