myRT

myRT report for GCA_003349715.1_ASM334971v1

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Seq: QECH01000199.1 Vibrio cholerae strain OYP4A01 Vc_OYP4A01_Contig_199, whole genome shotgun sequence (4927 bp)
Overview 1 RT 1: 60-4885 bp Neighborhood of RT #1 [60, 4885] RVT-Retrons TIR_2 Feature: gene Location: 60-818 bp Feature: gene Location: 1076-2386 bp Feature: gene Location: 2749-4344 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3001-3613 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3001 -361 3 bp Feature: domain Description: TIR_2 Location: 3949-4333 bp Feature: domain Description: TIR_2 Location: 3949-4333 bp Feature: gene Location: 4379-4885 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, TIR_2 (pfam13676)

Seq: QECH01000020.1 Vibrio cholerae strain OYP4A01 Vc_OYP4A01_Contig_20, whole genome shotgun sequence (101519 bp)
Overview 1 RT 1: 48249-56258 bp Neighborhood of RT #1 [48249, 56258] carB RVT-Retrons PRK10621 Feature: gene Location: 48249-51479 bp Feature: domain Description: carB Location: 48252-51450 bp Feature: domain Description: carB Location: 482 52 -51450 bp Feature: gene Location: 51569-52051 bp Feature: gene Location: 52574-54409 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52709-53405 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52 709-53405 bp Feature: gene Location: 54977-55762 bp Feature: domain Description: PRK10621 Location: 54986-55757 bp Feature: domain Description: PRK1062 1 Location: 54986-55757 bp Feature: gene Location: 56085-56258 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT carB (PRK12815), RVT-Retrons, PRK10621 (hypothetical protein; Provisional)

Seq: QECH01000090.1 Vibrio cholerae strain OYP4A01 Vc_OYP4A01_Contig_90, whole genome shotgun sequence (10075 bp)
Overview 1 RT 1: 71-3334 bp Neighborhood of RT #1 [71, 3336] RVT-GII GIIM PRK12440 Feature: gene Location: 71-1354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284-905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284-905 bp Feature: domain Description: GIIM Note: maturase Location: 956-1175 bp Feature: domain Description: GIIM Note: maturase Location: 956-1175 bp Feature: gene Location: 1551-2141 bp Feature: gene Location: 2143-3336 bp Feature: domain Description: PRK12440 Location: 2146-3334 bp Feature: domain Description: PRK12440 Location: 2146-3 3 3 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12440 (acetate/propionate family kinase), RVT-GII, GIIM (pfam08388)