myRT

myRT report for GCA_003349725.1_ASM334972v1

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Seq: QECI01000101.1 Vibrio cholerae strain OYP3E02 Vc_OYP3E02_Contig_108, whole genome shotgun sequence (10337 bp)
Overview 1 RT 1: 5101-10330 bp Neighborhood of RT #1 [5101, 10335] PRK09246 RVT-GII GIIM YbjD Feature: gene Location: 5101-6615 bp Feature: domain Description: PRK09246 Location: 5104-6601 bp Feature: domain Description: PRK09246 Location: 51 04-6601 bp Feature: gene Location: 6640-7212 bp Feature: gene Location: 7478-8692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7622-8243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7622-8243 bp Feature: domain Description: GIIM Note: maturase Location: 8294-8513 bp Feature: domain Description: GIIM Note: maturase Location: 8294-851 3 bp Feature: gene Location: 8824-10335 bp Feature: domain Description: YbjD Location: 8827-10330 bp Feature: domain Description: YbjD Location: 8827-1 0330 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09246 (amidophosphoribosyltransferase; Provisional), RVT-GII, GIIM (pfam08388), YbjD (COG3593)

Seq: QECI01000315.1 Vibrio cholerae strain OYP3E02 Vc_OYP3E02_Contig_268, whole genome shotgun sequence (3951 bp)
Overview 1 RT 1: 1-3868 bp Neighborhood of RT #1 [1, 3948] RVT-Retrons MGS_CPS_II Feature: gene Location: 1-159 bp Feature: gene Location: 587-2530 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 830-1526 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 830-152 6 bp Feature: gene Location: 2945-3427 bp Feature: gene Location: 3517-3948 bp Feature: domain Description: MGS_CPS_II Location: 3544-3868 bp Feature: domain Description: MGS_CPS_II Location: 3544-3868 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MGS_CPS_II (cd01424), RVT-Retrons

Seq: QECI01000198.1 Vibrio cholerae strain OYP3E02 Vc_OYP3E02_Contig_27, whole genome shotgun sequence (6603 bp)
Overview 1 RT 1: 1710-6535 bp Neighborhood of RT #1 [1710, 6535] RVT-Retrons TIR_2 Feature: gene Location: 1710-2468 bp Feature: gene Location: 2726-4036 bp Feature: gene Location: 4399-5994 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4651-5263 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4651-5263 bp Feature: domain Description: TIR_2 Location: 5599-5983 bp Feature: domain Description: TIR_2 Location: 5599-5983 bp Feature: gene Location: 6029-6535 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, TIR_2 (pfam13676)