myRT

myRT report for GCA_003350635.1_ASM335063v1

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Seq: KZ852702.1 Enterococcus faecium strain IHC26 genomic scaffold ICH26_contig_43_consensus, whole genome shotgun sequence (6071 bp)
Overview 1 RT 1: 5-4674 bp Neighborhood of RT #1 [5, 4748] RVT-AbiP2 Transposase_mut HsdM Feature: gene Location: 5-1456 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 329-794 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 329-794 bp Feature: gene Location: 1635-2807 bp Feature: domain Description: Transposase_mut Location: 1638-2775 bp Feature: domain Description: Transposase_mut Location: 1 638-2775 bp Feature: gene Location: 3126-4748 bp Feature: domain Description: HsdM Location: 3147-4674 bp Feature: domain Description: HsdM Location: 31 47-4674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, Transposase_mut (pfam00872), HsdM (COG0286)

Seq: KZ852770.1 Enterococcus faecium strain IHC26 genomic scaffold ICH26_contig_149_consensus, whole genome shotgun sequence (11585 bp)
Overview 1 RT 1: 8994-11584 bp Neighborhood of RT #1 [8994, 11583] RelB_DinJ FtsK_SpoIIIE RVT-GII Feature: gene Location: 8994-9338 bp Feature: domain Description: RelB_DinJ Location: 9204-9330 bp Feature: domain Description: RelB_DinJ Location: 92 04-9330 bp Feature: gene Location: 9407-10423 bp Feature: domain Description: FtsK_SpoIIIE Location: 10064-10304 bp Feature: domain Description: FtsK_SpoIIIE Location: 10064-10304 bp Feature: gene Location: 11017-11583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11383-11584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11383-11584 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RelB_DinJ (TIGR02384), FtsK_SpoIIIE (pfam01580), RVT-GII

Seq: KZ852833.1 Enterococcus faecium strain IHC26 genomic scaffold ICH26_contig_24_consensus, whole genome shotgun sequence (26898 bp)
Overview 1 RT 1: 18569-26782 bp Neighborhood of RT #1 [18569, 26895] ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Dcm FtsK RVT-GII HNHc Feature: gene Location: 18569-19072 bp Feature: domain Description: ArdA Location: 18587-19058 bp Feature: domain Description: ArdA Location: 18587-19058 bp Feature: gene Location: 19085-19237 bp Feature: gene Location: 19413-21323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19746-20484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19746-20484 bp Feature: domain Description: HNHc Note: nucleases Location: 21039-21204 bp Feature: domain Description: HNHc Note: nucleases Location: 2103 9-21204 bp Feature: gene Location: 22203-23387 bp Feature: domain Description: HTH_XRE Location: 22233-22377 bp Feature: domain Description: HTH_XRE Location: 2223 3 -223 77 bp Feature: domain Description: Rol_Rep_N Location: 22410-22674 bp Feature: domain Description: Rol_Rep_N Location: 22410-22674 bp Feature: domain Description: Rep_trans Location: 22698-23310 bp Feature: domain Description: Rep_trans Location: 22698-23 3 10 bp Feature: gene Location: 23922-25064 bp Feature: domain Description: Dcm Location: 23925-25038 bp Feature: domain Description: Dcm Location: 23 925-2503 8 bp Feature: gene Location: 25109-25489 bp Feature: domain Description: FtsK Location: 25124-25364 bp Feature: domain Description: FtsK Location: 25124-253 64 bp Feature: gene Location: 25591-26895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25594-26083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25594-26083 bp Feature: domain Description: HNHc Note: nucleases Location: 26623-26782 bp Feature: domain Description: HNHc Note: nucleases Location: 26623 -26782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdA (pfam07275), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), Dcm (COG0270), FtsK (COG1674)