myRT

myRT report for GCA_003350705.1_ASM335070v1

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Seq: KZ853826.1 Enterococcus faecium strain IHC30 genomic scaffold IHC30_contig_129_consensus, whole genome shotgun sequence (3257 bp)
Overview 1 RT 1: 3-3241 bp Neighborhood of RT #1 [3, 3255] RVT-AbiP2 HsdM Feature: gene Location: 3-1457 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 330-795 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 330-795 bp Feature: gene Location: 1795-3255 bp Feature: domain Description: HsdM Location: 1816-3241 bp Feature: domain Description: HsdM Location: 1 81 6-3241 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, HsdM (COG0286)

Seq: KZ854028.1 Enterococcus faecium strain IHC30 genomic scaffold IHC30_contig_60_consensus, whole genome shotgun sequence (32208 bp)
Overview 1 RT 1: 4-5334 bp Neighborhood of RT #1 [4, 5405] AAA_10 RVT-GII AAA_10 TcpE Feature: gene Location: 4-822 bp Feature: domain Description: AAA_10 Location: 10-808 bp Feature: domain Description: AAA_10 Location: 10-808 bp Feature: gene Location: 956-2782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1256-1955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 56-1955 bp Feature: gene Location: 3479-5029 bp Feature: domain Description: AAA_10 Location: 4808-4991 bp Feature: domain Description: AAA_10 Location: 4808-4991 bp Feature: gene Location: 5016-5405 bp Feature: domain Description: TcpE Location: 5034-5334 bp Feature: domain Description: TcpE Location: 5034-5334 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_10 (pfam12846), RVT-GII, TcpE (pfam12648)

Seq: KZ854029.1 Enterococcus faecium strain IHC30 genomic scaffold IHC30_contig_61_consensus, whole genome shotgun sequence (20409 bp)
Overview 1 RT 1: 6192-11750 bp Neighborhood of RT #1 [6192, 11758] Dcm FtsK RVT-GII HNHc FtsK_SpoIIIE RelB_DinJ Feature: gene Location: 6192-7334 bp Feature: domain Description: Dcm Location: 6195-7308 bp Feature: domain Description: Dcm Location: 6195-73 08 bp Feature: gene Location: 7379-7759 bp Feature: domain Description: FtsK Location: 7394-7634 bp Feature: domain Description: FtsK Location: 73 94-763 4 bp Feature: gene Location: 7861-9735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8227-8923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8227-8923 bp Feature: domain Description: HNHc Note: nucleases Location: 9463-9622 bp Feature: domain Description: HNHc Note: nucleases Location: 9463 -9622 bp Feature: gene Location: 10329-11360 bp Feature: domain Description: FtsK_SpoIIIE Location: 11001-11241 bp Feature: domain Description: FtsK_SpoIIIE Location: 11001-11241 bp Feature: gene Location: 11414-11758 bp Feature: domain Description: RelB_DinJ Location: 11624-11750 bp Feature: domain Description: RelB_DinJ Location: 11624-11750 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), FtsK (COG1674), RVT-GII, HNHc (smart00507), FtsK_SpoIIIE (pfam01580), RelB_DinJ (TIGR02384)