myRT

myRT report for GCA_003350715.1_ASM335071v1

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Seq: KZ854117.1 Enterococcus faecium strain IHC32 genomic scaffold IHC32_contig_140_consensus, whole genome shotgun sequence (21083 bp)
Overview 1 RT 1: 16341-21081 bp Neighborhood of RT #1 [16341, 21081] VirB4 RVT-GII HNHc Feature: gene Location: 16341-18035 bp Feature: domain Description: VirB4 Location: 16659-17343 bp Feature: domain Description: VirB4 Location: 1 6659-1 7343 bp Feature: gene Location: 18303-18536 bp Feature: gene Location: 18723-20600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19038-19776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9038-1 9776 bp Feature: domain Description: HNHc Note: nucleases Location: 20334-20487 bp Feature: domain Description: HNHc Note: nucleases Location: 20334-20487 bp Feature: gene Location: 20788-21081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507)

Seq: KZ854173.1 Enterococcus faecium strain IHC32 genomic scaffold IHC32_contig_191_consensus, whole genome shotgun sequence (4020 bp)
Overview 1 RT 1: 110-3994 bp Neighborhood of RT #1 [110, 4017] HsdM RVT-AbiP2 Tra8 Feature: gene Location: 110-1588 bp Feature: domain Description: HsdM Location: 131-1556 bp Feature: domain Description: HsdM Location: 131-1556 bp Feature: gene Location: 1926-3401 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2274-2739 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2 2 74-2 739 bp Feature: gene Location: 3379-4017 bp Feature: domain Description: Tra8 Location: 3385-3994 bp Feature: domain Description: Tra8 Location: 3385-3994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RVT-AbiP2, Tra8 (COG2826)

Seq: KZ854353.1 Enterococcus faecium strain IHC32 genomic scaffold IHC32_contig_94_consensus, whole genome shotgun sequence (39672 bp)
Overview 1 RT 1: 16482-21536 bp Neighborhood of RT #1 [16482, 21536] ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 16482-16985 bp Feature: domain Description: ArdA Location: 16500-16971 bp Feature: domain Description: ArdA Location: 16500-16971 bp Feature: gene Location: 16987-17196 bp Feature: gene Location: 17326-19236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17659-18397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17659-183 97 bp Feature: domain Description: HNHc Note: nucleases Location: 18952-19117 bp Feature: domain Description: HNHc Note: nucleases Location: 18952-19117 bp Feature: gene Location: 20116-21300 bp Feature: domain Description: HTH_XRE Location: 20146-20290 bp Feature: domain Description: HTH_XRE Location: 20146-20290 bp Feature: domain Description: Rol_Rep_N Location: 20323-20587 bp Feature: domain Description: Rol_Rep_N Location: 203 23 -20587 bp Feature: domain Description: Rep_trans Location: 20611-21223 bp Feature: domain Description: Rep_trans Location: 20611-21223 bp Feature: gene Location: 21393-21536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdA (pfam07275), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)