myRT

myRT report for GCA_003350905.1_ASM335090v1

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Seq: KZ857004.1 Enterococcus faecium strain IHC129 genomic scaffold IHC129_contig_96_consensus, whole genome shotgun sequence (3914 bp)
Overview 1 RT 1: 3-3890 bp Neighborhood of RT #1 [3, 3913] HsdM RVT-AbiP2 Tra8 Feature: gene Location: 3-1463 bp Feature: domain Description: HsdM Location: 24-1449 bp Feature: domain Description: HsdM Location: 24-1 449 bp Feature: gene Location: 1801-3276 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2149-2614 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 21 49-261 4 bp Feature: gene Location: 3254-3913 bp Feature: domain Description: Tra8 Location: 3269-3890 bp Feature: domain Description: Tra8 Location: 3269-3890 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RVT-AbiP2, Tra8 (COG2826)

Seq: KZ857079.1 Enterococcus faecium strain IHC129 genomic scaffold IHC129_contig_17_consensus, whole genome shotgun sequence (9979 bp)
Overview 1 RT 1: 5237-9977 bp Neighborhood of RT #1 [5237, 9977] VirB4 RVT-GII HNHc Feature: gene Location: 5237-6931 bp Feature: domain Description: VirB4 Location: 5555-6239 bp Feature: domain Description: VirB4 Location: 5555-62 39 bp Feature: gene Location: 7199-7432 bp Feature: gene Location: 7619-9496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7934-8672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7934-8672 bp Feature: domain Description: HNHc Note: nucleases Location: 9230-9383 bp Feature: domain Description: HNHc Note: nucleases Location: 92 30-9383 bp Feature: gene Location: 9684-9977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507)

Seq: KZ857163.1 Enterococcus faecium strain IHC129 genomic scaffold IHC129_contig_74_consensus, whole genome shotgun sequence (39186 bp)
Overview 1 RT 1: 15997-21051 bp Neighborhood of RT #1 [15997, 21051] ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 15997-16500 bp Feature: domain Description: ArdA Location: 16015-16486 bp Feature: domain Description: ArdA Location: 16015-16486 bp Feature: gene Location: 16502-16711 bp Feature: gene Location: 16841-18751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17174-17912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17174-17912 bp Feature: domain Description: HNHc Note: nucleases Location: 18467-18632 bp Feature: domain Description: HNHc Note: nucleases Location: 18467-1863 2 bp Feature: gene Location: 19631-20815 bp Feature: domain Description: HTH_XRE Location: 19661-19805 bp Feature: domain Description: HTH_XRE Location: 19661-19805 bp Feature: domain Description: Rol_Rep_N Location: 19838-20102 bp Feature: domain Description: Rol_Rep_N Location: 1983 8-20102 bp Feature: domain Description: Rep_trans Location: 20126-20738 bp Feature: domain Description: Rep_trans Location: 20126-2073 8 bp Feature: gene Location: 20908-21051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdA (pfam07275), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)