myRT

myRT report for GCA_003353175.1_ASM335317v1

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Seq: QHKS01000011.1 Paraburkholderia sp. S27 S27_11, whole genome shotgun sequence (276662 bp)
Overview 1 RT 1: 5545-16177 bp Neighborhood of RT #1 [5545, 16458] DUF4011 DEXXQc_SF1 KOG1803 MTES_1575 DUF3320 RVT-UG7 DUF4276 Feature: gene Location: 5545-5886 bp Feature: gene Location: 6129-12059 bp Feature: domain Description: DUF4011 Location: 7329-7845 bp Feature: domain Description: DUF401 1 Location: 7329-7845 bp Feature: domain Description: DEXXQc_SF1 Location: 8187-10410 bp Feature: domain Description: DEXXQc_SF1 Location: 81 87-1 041 0 bp Feature: domain Description: KOG1803 Location: 10515-10926 bp Feature: domain Description: KOG1 803 Location: 1 051 5-1 0926 bp Feature: domain Description: MTES_1575 Location: 11079-11370 bp Feature: domain Description: MTES_1 575 Location: 1 1 079-1 1 370 bp Feature: domain Description: DUF3320 Location: 11553-11697 bp Feature: domain Description: DUF3320 Location: 1 1 553-1 1 697 bp Feature: gene Location: 12428-14119 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 12851-13268 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1 2851 -1 3268 bp Feature: gene Location: 14109-14831 bp Feature: gene Location: 15652-16458 bp Feature: domain Description: DUF4276 Location: 15679-16177 bp Feature: domain Description: DUF4276 Location: 1 5679-1 61 77 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-UG7, DUF4276 (pfam14103)

Seq: QHKS01000031.1 Paraburkholderia sp. S27 S27_31, whole genome shotgun sequence (81657 bp)
Overview 1 RT 1: 1623-6846 bp Neighborhood of RT #1 [1623, 6992] COG3547 RVT_N RVT-GII GIIM COG3547 OmpR Feature: gene Location: 1623-2450 bp Feature: domain Description: COG3547 Location: 1641-2427 bp Feature: domain Description: COG3547 Location: 1641-2 42 7 bp Feature: gene Location: 3306-3479 bp Feature: gene Location: 3525-5021 bp Feature: domain Description: RVT_N Location: 3588-3825 bp Feature: domain Description: RVT_N Location: 3588-382 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3876-4518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3876-4518 bp Feature: domain Description: GIIM Note: maturase Location: 4569-4803 bp Feature: domain Description: GIIM Note: maturase Location: 4569-4803 bp Feature: gene Location: 5012-5974 bp Feature: domain Description: COG3547 Location: 5123-5900 bp Feature: domain Description: COG3547 Location: 512 3-5900 bp Feature: gene Location: 6090-6992 bp Feature: domain Description: OmpR Location: 6192-6846 bp Feature: domain Description: OmpR Location: 6192 -6846 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), OmpR (COG0745)

Seq: QHKS01000043.1 Paraburkholderia sp. S27 S27_43, whole genome shotgun sequence (47902 bp)
Overview 1 RT 1: 26176-29907 bp Neighborhood of RT #1 [26176, 30566] PBP2_NikA_DppA_OppA_like_17 RVT_N RVT-GII GIIM HNH Rve HTH_28 Feature: gene Location: 26176-26634 bp Feature: domain Description: PBP2_NikA_DppA_OppA_like_17 Location: 26356-26560 bp Feature: domain Description: PBP2_NikA_DppA_OppA_like_17 Location: 263 56-26560 bp Feature: gene Location: 26637-26804 bp Feature: gene Location: 26918-28564 bp Feature: domain Description: RVT_N Location: 26963-27206 bp Feature: domain Description: RVT_N Location: 26963 -27206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27251-27887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27251-27887 bp Feature: domain Description: GIIM Note: maturase Location: 27938-28172 bp Feature: domain Description: GIIM Note: maturase Location: 2793 8-28172 bp Feature: domain Description: HNH Note: nucleases Location: 28424-28541 bp Feature: domain Description: HNH Note: nucleases Location: 28424-28541 bp Feature: gene Location: 29047-29688 bp Feature: domain Description: Rve Location: 29095-29614 bp Feature: domain Description: Rve Location: 29095-29614 bp Feature: gene Location: 29697-30566 bp Feature: domain Description: HTH_28 Location: 29802-29907 bp Feature: domain Description: HTH_28 Location: 29802-29907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_NikA_DppA_OppA_like_17 (cd08503), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), Rve (COG3316), HTH_28 (pfam13518)