myRT

myRT report for GCA_003353735.1_ASM335373v1

Download annotations/find similar RTs

Seq: PIWA01000251.1 Colwellia psychrerythraea isolate Glo_19 GloG15_CONTIG17747, whole genome shotgun sequence (6490 bp)
Overview 1 RT 1: 1597-5588 bp Neighborhood of RT #1 [1597, 5588] INT_Rci_Hp1_C RVT-Retrons Feature: gene Location: 1597-2658 bp Feature: domain Description: INT_Rci_Hp1_C Location: 2131-2602 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 21 31 -2602 bp Feature: gene Location: 2689-3399 bp Feature: gene Location: 3473-4657 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3620-4199 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3620-41 99 bp Feature: gene Location: 4760-4924 bp Feature: gene Location: 5211-5588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Rci_Hp1_C (cd00796), RVT-Retrons

Seq: PIWA01000028.1 Colwellia psychrerythraea isolate Glo_19 GloG15_CONTIG3560, whole genome shotgun sequence (18283 bp)
Overview 1 RT 1: 1467-10112 bp Neighborhood of RT #1 [1467, 10696] HsdM RMtype1_S_SonII-TRD2-CR2_like RMtype1_S_SonII-TRD2-CR2_like RVT-UG5 CDC6 McrB Feature: gene Location: 1467-2954 bp Feature: domain Description: HsdM Location: 1473-2937 bp Feature: domain Description: HsdM Location: 1473-2 937 bp Feature: gene Location: 2954-4777 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 3293-3857 bp Feature: domain Description: RMtype1_S_SonII-TRD2 -CR2 _like Location: 32 93-3857 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 4202-4760 bp Feature: domain Description: RMtype1_S_SonII-TRD2 -CR2 _like Location: 42 02 -4760 bp Feature: gene Location: 4793-7999 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 5318-5843 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 5318-5843 bp Feature: gene Location: 8009-8461 bp Feature: gene Location: 8492-10696 bp Feature: domain Description: CDC6 Location: 9392-9482 bp Feature: domain Description: CDC6 Location: 9392 -9482 bp Feature: domain Description: McrB Location: 9818-10112 bp Feature: domain Description: McrB Location: 9818-10112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RMtype1_S_SonII-TRD2-CR2_like (cd17246), RVT-UG5, CDC6 (COG1474), McrB (COG4054)

Seq: PIWA01000722.1 Colwellia psychrerythraea isolate Glo_19 GloG15_CONTIG83105, whole genome shotgun sequence (2543 bp)
Overview 1 RT 1: 261-1557 bp Neighborhood of RT #1 [261, 1557] RVT-Retrons Feature: gene Location: 261-1277 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 420-897 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 420-897 bp Feature: gene Location: 1261-1557 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons