myRT

myRT report for GCA_003353945.1_ASM335394v1

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Seq: PIVM01000381.1 Gammaproteobacteria bacterium isolate Glo_5 GloG15_CONTIG101236, whole genome shotgun sequence (2259 bp)
Overview 1 RT 1: 3-2147 bp Neighborhood of RT #1 [3, 2147] RVT-GII Feature: gene Location: 3-248 bp Feature: gene Location: 250-1560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 535-1213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 535-1 21 3 bp Feature: gene Location: 1697-1957 bp Feature: gene Location: 2019-2147 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PIVM01000385.1 Gammaproteobacteria bacterium isolate Glo_5 GloG15_CONTIG104035, whole genome shotgun sequence (2223 bp)
Overview 1 RT 1: 167-1716 bp Neighborhood of RT #1 [167, 1716] RVT-GII Feature: gene Location: 167-1573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 545-1226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 545-12 2 6 bp Feature: gene Location: 1579-1716 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PIVM01000164.1 Gammaproteobacteria bacterium isolate Glo_5 GloG15_CONTIG12214, whole genome shotgun sequence (8198 bp)
Overview 1 RT 1: 1-8175 bp Neighborhood of RT #1 [1, 8175] retropepsin_like RVT-CRISPR-like RNase_HI_RT_Ty3 Integrase_H2C2 rve Feature: gene Location: 1-7833 bp Feature: domain Description: retropepsin_like Location: 859-1144 bp Feature: domain Description: retropepsin_like Location: 859-1144 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2194-2407 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2194-2407 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 2725-3079 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 2725-3 079 bp Feature: domain Description: Integrase_H2C2 Location: 4243-4402 bp Feature: domain Description: Integrase_H2C2 Location: 4243 -4402 bp Feature: domain Description: rve Location: 4468-4789 bp Feature: domain Description: rve Location: 4468-4789 bp Feature: gene Location: 7984-8175 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like (cd00303), RVT-CRISPR, RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665)

Seq: PIVM01000428.1 Gammaproteobacteria bacterium isolate Glo_5 GloG15_CONTIG128513, whole genome shotgun sequence (1953 bp)
Overview 1 RT 1: 69-1950 bp Neighborhood of RT #1 [69, 1950] RVT-GII GIIM Feature: gene Location: 69-1376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 297-912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 297-912 bp Feature: domain Description: GIIM Note: maturase Location: 957-1161 bp Feature: domain Description: GIIM Note: maturase Location: 957-1161 bp Feature: gene Location: 1520-1741 bp Feature: gene Location: 1792-1950 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PIVM01000434.1 Gammaproteobacteria bacterium isolate Glo_5 GloG15_CONTIG131697, whole genome shotgun sequence (1924 bp)
Overview 1 RT 1: 3-1713 bp Neighborhood of RT #1 [3, 1922] RVT-GII GIIM Feature: gene Location: 3-131 bp Feature: gene Location: 543-1922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 813-1428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 813-1428 bp Feature: domain Description: GIIM Note: maturase Location: 1482-1713 bp Feature: domain Description: GIIM Note: maturase Location: 1482-1713 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PIVM01000168.1 Gammaproteobacteria bacterium isolate Glo_5 GloG15_CONTIG13733, whole genome shotgun sequence (7626 bp)
Overview 1 RT 1: 615-7148 bp Neighborhood of RT #1 [615, 7603] L1-EN RVT-CRISPR-like zf-RVT Feature: gene Location: 615-2675 bp Feature: gene Location: 2675-7603 bp Feature: domain Description: L1-EN Location: 2717-3530 bp Feature: domain Description: L1-EN Location: 2717-3530 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 4487-5132 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 4487-5132 bp Feature: domain Description: zf-RVT Location: 6923-7148 bp Feature: domain Description: zf-RVT Location: 6 923-7148 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT L1-EN (cd09076), RVT-CRISPR, zf-RVT (pfam13966)

Seq: PIVM01000193.1 Gammaproteobacteria bacterium isolate Glo_5 GloG15_CONTIG18106, whole genome shotgun sequence (6415 bp)
Overview 1 RT 1: 3-6065 bp Neighborhood of RT #1 [3, 6412] retropepsin_like RVT-UNC RNase_HI_RT_Ty3 Integrase_H2C2 rve CD_CSD Feature: gene Location: 3-953 bp Feature: gene Location: 1059-1229 bp Feature: gene Location: 1544-6412 bp Feature: domain Description: retropepsin_like Location: 2792-3050 bp Feature: domain Description: retropepsin_like Location: 27 92-3050 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3752-3905 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 37 52-3905 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 4232-4688 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 4232-4688 bp Feature: domain Description: Integrase_H2C2 Location: 4856-5009 bp Feature: domain Description: Integrase_H2C2 Location: 4856-5009 bp Feature: domain Description: rve Location: 5063-5393 bp Feature: domain Description: rve Location: 5063-5393 bp Feature: domain Description: CD_CSD Location: 5915-6065 bp Feature: domain Description: CD_CSD Location: 5915-6065 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like (cd00303), RVT-G2Lb/RVT-UG25/RVT-DGRs/RVT-Retrons(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665), CD_CSD (cl28914)

Seq: PIVM01000198.1 Gammaproteobacteria bacterium isolate Glo_5 GloG15_CONTIG19686, whole genome shotgun sequence (6063 bp)
Overview 1 RT 1: 3-5739 bp Neighborhood of RT #1 [3, 6062] retropepsin_like_bacteria RVT-UG17 RNase_HI_RT_Ty3 Integrase_H2C2 rve Feature: gene Location: 3-6062 bp Feature: domain Description: retropepsin_like_bacteria Location: 2448-2724 bp Feature: domain Description: retropepsin_like_bacteria Location: 2448 -2724 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3753-3954 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3753-3954 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 4245-4593 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 4245-4593 bp Feature: domain Description: Integrase_H2C2 Location: 5184-5358 bp Feature: domain Description: Integrase_H2C2 Location: 518 4-5358 bp Feature: domain Description: rve Location: 5409-5739 bp Feature: domain Description: rve Location: 5409-5739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like_bacteria (cd05483), RVT-UG17, RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665)

Seq: PIVM01000215.1 Gammaproteobacteria bacterium isolate Glo_5 GloG15_CONTIG25395, whole genome shotgun sequence (5180 bp)
Overview 1 RT 1: 2612-5178 bp Neighborhood of RT #1 [2612, 5178] StbD toxin_Txe_YoeB RVT-GII GIIM Feature: gene Location: 2612-2854 bp Feature: domain Description: StbD Location: 2615-2852 bp Feature: domain Description: StbD Location: 2615-2852 bp Feature: gene Location: 2866-3114 bp Feature: domain Description: toxin_Txe_YoeB Location: 2872-3109 bp Feature: domain Description: toxin_Txe_YoeB Location: 2872-3109 bp Feature: gene Location: 3212-4579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3539-4154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3539 -4154 bp Feature: domain Description: GIIM Note: maturase Location: 4208-4418 bp Feature: domain Description: GIIM Note: maturase Location: 4208-4418 bp Feature: gene Location: 4936-5178 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT StbD (COG2161), toxin_Txe_YoeB (TIGR02116), RVT-GII, GIIM (pfam08388)

Seq: PIVM01000637.1 Gammaproteobacteria bacterium isolate Glo_5 GloG15_CONTIG278663, whole genome shotgun sequence (1206 bp)
Overview 1 RT 1: 1-472 bp Neighborhood of RT #1 [1, 1203] RVT-CRISPR-like Feature: gene Location: 1-1203 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 49-472 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 49-472 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: PIVM01000225.1 Gammaproteobacteria bacterium isolate Glo_5 GloG15_CONTIG28747, whole genome shotgun sequence (4793 bp)
Overview 1 RT 1: 1-3151 bp Neighborhood of RT #1 [1, 3168] RVT-GII GIIM RVT-GII Cdd1 CcdB Feature: gene Location: 1-1332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 307-961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 307-961 bp Feature: domain Description: GIIM Note: maturase Location: 1045-1264 bp Feature: domain Description: GIIM Note: maturase Location: 1045-1264 bp Feature: gene Location: 1360-1506 bp Feature: gene Location: 1715-2488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1721-2117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1721-211 7 bp Feature: gene Location: 2620-2922 bp Feature: domain Description: Cdd1 Location: 2638-2887 bp Feature: domain Description: Cdd1 Location: 2638-2887 bp Feature: gene Location: 2989-3168 bp Feature: domain Description: CcdB Location: 2995-3151 bp Feature: domain Description: CcdB Location: 2995-3151 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Cdd1 (pfam11731), CcdB (pfam01845)

Seq: PIVM01000099.1 Gammaproteobacteria bacterium isolate Glo_5 GloG15_CONTIG3697, whole genome shotgun sequence (17870 bp)
Overview 1 RT 1: 5460-11032 bp Neighborhood of RT #1 [5460, 11049] CspC RVT-GII ChcA_like_SDR_c PRK11904 Feature: gene Location: 5460-5666 bp Feature: domain Description: CspC Location: 5463-5661 bp Feature: domain Description: CspC Location: 5463-5661 bp Feature: gene Location: 5790-5948 bp Feature: gene Location: 6192-6653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6204-6459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6204-6459 bp Feature: gene Location: 6937-7695 bp Feature: domain Description: ChcA_like_SDR_c Location: 6958-7693 bp Feature: domain Description: ChcA_like_SDR_c Location: 6958-7693 bp Feature: gene Location: 7900-11049 bp Feature: domain Description: PRK11904 Location: 7924-11032 bp Feature: domain Description: PRK11904 Location: 7924-11032 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CspC (COG1278), RVT-GII, ChcA_like_SDR_c (cd05359), PRK11904 (bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA)

Seq: PIVM01000279.1 Gammaproteobacteria bacterium isolate Glo_5 GloG15_CONTIG46517, whole genome shotgun sequence (3605 bp)
Overview 1 RT 1: 1-2893 bp Neighborhood of RT #1 [1, 2958] RVT-GII RVT-GII Phd Feature: gene Location: 1-267 bp Feature: gene Location: 638-1024 bp Feature: gene Location: 1051-1521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1078-1279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1078-1279 bp Feature: gene Location: 1509-2261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1809-2166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1809-2166 bp Feature: gene Location: 2303-2557 bp Feature: gene Location: 2716-2958 bp Feature: domain Description: Phd Location: 2731-2893 bp Feature: domain Description: Phd Location: 2731-2893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Phd (COG4118)

Seq: PIVM01000281.1 Gammaproteobacteria bacterium isolate Glo_5 GloG15_CONTIG46973, whole genome shotgun sequence (3585 bp)
Overview 1 RT 1: 22-2810 bp Neighborhood of RT #1 [22, 3349] RVT-GII COG2006 Feature: gene Location: 22-1389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298-988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298-988 bp Feature: gene Location: 1307-1726 bp Feature: gene Location: 1913-3349 bp Feature: domain Description: COG2006 Location: 2009-2810 bp Feature: domain Description: COG2006 Location: 2009-2810 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG2006 (Uncharacterized conserved protein, DUF362 family )

Seq: PIVM01000322.1 Gammaproteobacteria bacterium isolate Glo_5 GloG15_CONTIG63259, whole genome shotgun sequence (2997 bp)
Overview 1 RT 1: 3-1578 bp Neighborhood of RT #1 [3, 2897] RVT-UNC Feature: gene Location: 3-2897 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 882-1578 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 882-15 78 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27/RVT-GII/RVT-CRISPR(RVT-UNC)

Seq: PIVM01000134.1 Gammaproteobacteria bacterium isolate Glo_5 GloG15_CONTIG6568, whole genome shotgun sequence (12231 bp)
Overview 1 RT 1: 186-8261 bp Neighborhood of RT #1 [186, 11251] PNMA AIR1 retropepsin_like_LTR_2 RVT-GII RNase_HI_RT_Ty3 Integrase_H2C2 rve ZF_C2H2 Feature: gene Location: 186-2066 bp Feature: domain Description: PNMA Location: 861-1308 bp Feature: domain Description: PNMA Location: 861-1308 bp Feature: domain Description: AIR1 Location: 1659-1878 bp Feature: domain Description: AIR1 Location: 16 59-1878 bp Feature: gene Location: 2081-11251 bp Feature: domain Description: retropepsin_like_LTR_2 Location: 2540-2810 bp Feature: domain Description: retropepsin_like_LTR_2 Location: 2540-2810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4601-4760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4601-4760 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 5054-5405 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 5054-5405 bp Feature: domain Description: Integrase_H2C2 Location: 6002-6179 bp Feature: domain Description: Integrase_H2C2 Location: 6002-6179 bp Feature: domain Description: rve Location: 6236-6566 bp Feature: domain Description: rve Location: 6236-6566 bp Feature: domain Description: ZF_C2H2 Location: 8021-8261 bp Feature: domain Description: ZF_C2H2 Location: 8021-8261 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PNMA (pfam14893), AIR1 (COG5082), retropepsin_like_LTR_2 (cd05484), RVT-GII, RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665), ZF_C2H2 (sd00020)

Seq: PIVM01000343.1 Gammaproteobacteria bacterium isolate Glo_5 GloG15_CONTIG78046, whole genome shotgun sequence (2642 bp)
Overview 1 RT 1: 3-1956 bp Neighborhood of RT #1 [3, 2639] RVT-UG17 RNase_HI_RT_Ty3 Feature: gene Location: 3-2639 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1116-1317 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1116-1317 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1608-1956 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1608-1956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, RNase_HI_RT_Ty3 (cd09274)

Seq: PIVM01001013.1 Gammaproteobacteria bacterium isolate Glo_5 GloG15_CONTIG820132, whole genome shotgun sequence (621 bp)
Overview 1 RT 1: 40-310 bp Neighborhood of RT #1 [40, 405] RVT-GII Feature: gene Location: 40-177 bp Feature: gene Location: 187-405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193-310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193-310 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PIVM01001027.1 Gammaproteobacteria bacterium isolate Glo_5 GloG15_CONTIG840857, whole genome shotgun sequence (612 bp)
Overview 1 RT 1: 1-343 bp Neighborhood of RT #1 [1, 609] RVT-CRISPR-like Feature: gene Location: 1-609 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 82-343 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 82-343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR