myRT

myRT report for GCA_003357245.1_ASM335724v1

Download annotations/find similar RTs

Seq: QOLI01000086.1 Escherichia coli strain SC402 NODE_23_length_67213_cov_300.524_ID_63, whole genome shotgun sequence (67212 bp)
Overview 1 RT 1: 56009-61976 bp Neighborhood of RT #1 [56009, 61976] RVT_N RVT-GII GIIM HNHc DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc Feature: gene Location: 56009-56209 bp Feature: gene Location: 56320-56457 bp Feature: gene Location: 56482-58182 bp Feature: RT Description: RVT_N Location: 56536-56779 bp Feature: RT Description: RVT_N Location: 56536-56779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56824-57460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56824-57460 bp Feature: domain Description: GIIM Note: maturase Location: 57511-57745 bp Feature: domain Description: GIIM Note: maturase Location: 5751 1 -57745 bp Feature: domain Description: HNHc Note: nucleases Location: 57976-58126 bp Feature: domain Description: HNHc Note: nucleases Location: 57976-581 26 bp Feature: gene Location: 58748-59509 bp Feature: domain Description: DUF1281 Location: 58751-59237 bp Feature: domain Description: DUF1 281 Location: 58751 -59237 bp Feature: domain Description: DUF1281_C Location: 59243-59456 bp Feature: domain Description: DUF1 281 _C Location: 59243-59456 bp Feature: gene Location: 59693-61417 bp Feature: RT Description: RVT_N Location: 59750-59987 bp Feature: RT Description: RVT_N Location: 59750-59987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60038-60686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60038-60686 bp Feature: domain Description: YkfC Location: 60818-60974 bp Feature: domain Description: YkfC Location: 6081 8-60974 bp Feature: domain Description: HNHc Note: nucleases Location: 61202-61361 bp Feature: domain Description: HNHc Note: nucleases Location: 61 202-61 361 bp Feature: gene Location: 61458-61598 bp Feature: gene Location: 61680-61976 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406), YkfC (COG3344)

Seq: QOLI01000137.1 Escherichia coli strain SC402 NODE_3_length_267012_cov_180.497_ID_233, whole genome shotgun sequence (267012 bp)
Overview 1 RT 1: 153889-157925 bp Neighborhood of RT #1 [153889, 157927] RVT-Retrons COG3943 PRK15011 Feature: gene Location: 153889-154023 bp Feature: gene Location: 154035-154985 bp Feature: gene Location: 154972-155922 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 155071-155662 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 155071-155662 bp Feature: gene Location: 156215-156361 bp Feature: domain Description: COG3943 Location: 156218-156317 bp Feature: domain Description: COG3943 Location: 1562 18-156317 bp Feature: gene Location: 156743-157927 bp Feature: domain Description: PRK15011 Location: 156752-157925 bp Feature: domain Description: PRK15011 Location: 156752 -15792 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3943 (Uncharacterized conserved protein ), PRK15011 (sugar efflux transporter SetB)