myRT

myRT report for GCA_003357255.1_ASM335725v1

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Seq: QOLK01000036.1 Escherichia coli strain SC400 NODE_27_length_60691_cov_255.941_ID_63, whole genome shotgun sequence (60691 bp)
Overview 1 RT 1: 49511-55478 bp Neighborhood of RT #1 [49511, 55478] RVT_N RVT-GII GIIM HNHc DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc Feature: gene Location: 49511-49711 bp Feature: gene Location: 49822-49959 bp Feature: gene Location: 49984-51684 bp Feature: RT Description: RVT_N Location: 50038-50281 bp Feature: RT Description: RVT_N Location: 50038-50281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50326-50962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50326-50962 bp Feature: domain Description: GIIM Note: maturase Location: 51013-51247 bp Feature: domain Description: GIIM Note: maturase Location: 51 01 3-51 247 bp Feature: domain Description: HNHc Note: nucleases Location: 51478-51628 bp Feature: domain Description: HNHc Note: nucleases Location: 51 478-51 628 bp Feature: gene Location: 52250-53011 bp Feature: domain Description: DUF1281 Location: 52253-52739 bp Feature: domain Description: DUF1 281 Location: 52253-52739 bp Feature: domain Description: DUF1281_C Location: 52745-52958 bp Feature: domain Description: DUF1 281 _C Location: 52745-52958 bp Feature: gene Location: 53195-54919 bp Feature: RT Description: RVT_N Location: 53252-53489 bp Feature: RT Description: RVT_N Location: 53252-53489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53540-54188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53540-541 88 bp Feature: domain Description: YkfC Location: 54320-54476 bp Feature: domain Description: YkfC Location: 54320-54476 bp Feature: domain Description: HNHc Note: nucleases Location: 54704-54863 bp Feature: domain Description: HNHc Note: nucleases Location: 54704-54863 bp Feature: gene Location: 54960-55100 bp Feature: gene Location: 55182-55478 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406), YkfC (COG3344)

Seq: QOLK01000061.1 Escherichia coli strain SC400 NODE_3_length_267012_cov_161.815_ID_225, whole genome shotgun sequence (267012 bp)
Overview 1 RT 1: 153889-157925 bp Neighborhood of RT #1 [153889, 157927] RVT-Retrons COG3943 PRK15011 Feature: gene Location: 153889-154023 bp Feature: gene Location: 154035-154985 bp Feature: gene Location: 154972-155922 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 155071-155662 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 155071-155662 bp Feature: gene Location: 156215-156361 bp Feature: domain Description: COG3943 Location: 156218-156317 bp Feature: domain Description: COG3943 Location: 1562 18-156317 bp Feature: gene Location: 156743-157927 bp Feature: domain Description: PRK15011 Location: 156752-157925 bp Feature: domain Description: PRK15011 Location: 156752 -15792 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3943 (Uncharacterized conserved protein ), PRK15011 (sugar efflux transporter SetB)