myRT

myRT report for GCA_003358915.1_ASM335891v1

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Seq: QOOP01000207.1 Escherichia coli strain SC307 NODE_129_length_1552_cov_774.757_ID_687, whole genome shotgun sequence (1552 bp)
Overview 1 RT 1: 3-1536 bp Neighborhood of RT #1 [3, 1550] RVT_N RVT-GII Feature: gene Location: 3-164 bp Feature: gene Location: 276-458 bp Feature: gene Location: 738-1550 bp Feature: domain Description: RVT_N Location: 786-1023 bp Feature: domain Description: RVT_N Location: 786-1 023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1074-1536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 074-1 536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: QOOP01000122.1 Escherichia coli strain SC307 NODE_161_length_943_cov_805.062_ID_669, whole genome shotgun sequence (943 bp)
Overview 1 RT 1: 82-907 bp Neighborhood of RT #1 [82, 942] RVT-GII GIIM HNHc Feature: gene Location: 82-942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85-253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85-2 53 bp Feature: domain Description: GIIM Note: maturase Location: 304-538 bp Feature: domain Description: GIIM Note: maturase Location: 304-538 bp Feature: domain Description: HNHc Note: nucleases Location: 748-907 bp Feature: domain Description: HNHc Note: nucleases Location: 748-907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: QOOP01000009.1 Escherichia coli strain SC307 NODE_24_length_70267_cov_160.942_ID_29, whole genome shotgun sequence (70267 bp)
Overview 1 RT 1: 2990-7027 bp Neighborhood of RT #1 [2990, 7029] RVT-Retrons COG3943 PRK15011 Feature: gene Location: 2990-3124 bp Feature: gene Location: 3136-4086 bp Feature: gene Location: 4244-5023 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4250-4763 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4250-4763 bp Feature: gene Location: 5317-5463 bp Feature: domain Description: COG3943 Location: 5320-5419 bp Feature: domain Description: COG3 943 Location: 53 20-5419 bp Feature: gene Location: 5845-7029 bp Feature: domain Description: PRK15011 Location: 5854-7027 bp Feature: domain Description: PRK15011 Location: 5854-7027 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3943 (Uncharacterized conserved protein ), PRK15011 (sugar efflux transporter SetB)

Seq: QOOP01000256.1 Escherichia coli strain SC307 NODE_48_length_36776_cov_430.977_ID_83, whole genome shotgun sequence (36776 bp)
Overview 1 RT 1: 35382-36737 bp Neighborhood of RT #1 [35382, 36737] Rop RVT-GII Feature: gene Location: 35382-35561 bp Feature: domain Description: Rop Location: 35394-35445 bp Feature: domain Description: Rop Location: 35394 -354 4 5 bp Feature: gene Location: 35699-35845 bp Feature: gene Location: 36141-36446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36144-36396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3614 4 -36396 bp Feature: gene Location: 36477-36737 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rop (pfam01815), RVT-GII

Seq: QOOP01000084.1 Escherichia coli strain SC307 NODE_69_length_9816_cov_445.237_ID_145, whole genome shotgun sequence (9816 bp)
Overview 1 RT 1: 6262-9605 bp Neighborhood of RT #1 [6262, 9605] PRK10954 LuxR_C_like RVT-UG4 Feature: gene Location: 6262-6900 bp Feature: domain Description: PRK10954 Location: 6283-6895 bp Feature: domain Description: PRK1095 4 Location: 6283-6895 bp Feature: gene Location: 6938-7237 bp Feature: domain Description: LuxR_C_like Location: 7013-7166 bp Feature: domain Description: LuxR_C_like Location: 7013-7166 bp Feature: gene Location: 7263-8261 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 7602-8046 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 7602-8046 bp Feature: gene Location: 8294-9274 bp Feature: gene Location: 9477-9605 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10954 (thiol:disulfide interchange protein DsbA), LuxR_C_like (cd06170), RVT-UG4