myRT

myRT report for GCA_003363115.1_ASM336311v1

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Seq: QRBX01000005.1 Bacteroides fragilis strain HCK-B3 scaffold5, whole genome shotgun sequence (293350 bp)
Overview 1 RT 1: 164600-169943 bp Neighborhood of RT #1 [164600, 170404] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4141 Feature: gene Location: 164600-166882 bp Feature: domain Description: Bac_Flav_CT_G Location: 164855-166877 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 64855-1 66877 bp Feature: gene Location: 167075-167281 bp Feature: gene Location: 167461-169161 bp Feature: domain Description: RVT_N Location: 167560-167803 bp Feature: domain Description: RVT_N Location: 1 67560-1 67803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 167848-168496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 67848-1 68496 bp Feature: domain Description: GIIM Note: maturase Location: 168547-168781 bp Feature: domain Description: GIIM Note: maturase Location: 1 68547-1 68781 bp Feature: gene Location: 169164-169766 bp Feature: domain Description: Bac_Flav_CT_G Location: 169278-169740 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 69278-1 69740 bp Feature: gene Location: 169778-170404 bp Feature: domain Description: DUF4141 Location: 169790-169943 bp Feature: domain Description: DUF41 41 Location: 1 69790-1 69943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4141 (pfam13605)

Seq: QRBX01000006.1 Bacteroides fragilis strain HCK-B3 scaffold6, whole genome shotgun sequence (281780 bp)
Overview 1 RT 1: 168630-177594 bp Neighborhood of RT #1 [168630, 177596] RNase_Z rpsA RVT-Retrons GlnA3 Feature: gene Location: 168630-169544 bp Feature: domain Description: RNase_Z Location: 168645-169536 bp Feature: domain Description: RNase_Z Location: 168645-169536 bp Feature: gene Location: 169694-171487 bp Feature: domain Description: rpsA Location: 169772-171380 bp Feature: domain Description: rpsA Location: 169772 -171380 bp Feature: gene Location: 171629-172741 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 171944-172493 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 171944-172 493 bp Feature: gene Location: 172948-175167 bp Feature: gene Location: 175407-177596 bp Feature: domain Description: GlnA3 Location: 175482-177594 bp Feature: domain Description: GlnA3 Location: 175482 -177594 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_Z (TIGR02651), rpsA (TIGR00717), RVT-Retrons, GlnA3 (COG3968)

Seq: QRBX01000008.1 Bacteroides fragilis strain HCK-B3 scaffold8, whole genome shotgun sequence (239494 bp)
Overview 1 RT 1: 93481-98460 bp Neighborhood of RT #1 [93481, 98460] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 93481-93891 bp Feature: domain Description: Cas_Cmr5 Location: 93529-93775 bp Feature: domain Description: Cas_Cmr5 Location: 93 529-93 775 bp Feature: gene Location: 93894-94838 bp Feature: domain Description: Cmr6_III-B Location: 94050-94827 bp Feature: domain Description: Cmr6_III-B Location: 94050-94827 bp Feature: gene Location: 94858-97128 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 95065-95671 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 95065-95671 bp Feature: domain Description: Cas1_I-II-III Location: 96130-97087 bp Feature: domain Description: Cas1_I-II-III Location: 9613 0-97087 bp Feature: gene Location: 97122-97412 bp Feature: domain Description: Cas2_I_II_III Location: 97149-97359 bp Feature: domain Description: Cas2_I_II_III Location: 97149-973 59 bp Feature: gene Location: 98131-98460 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)