myRT

myRT report for GCA_003363235.1_ASM336323v1

Download annotations/find similar RTs

Seq: QRBY01000013.1 Bacteroides ovatus strain ELH-B2 scaffold13, whole genome shotgun sequence (179446 bp)
Overview 1 RT 1: 53497-63851 bp 2 RT 2: 102025-106706 bp Neighborhood of RT #1 [53497, 63862] DUF1566 RVT-DGRs Avd_like DUF1566 Neighborhood of RT #2 [102025, 106706] RVT-UG27 Feature: gene Location: 53497-55461 bp Feature: gene Location: 55524-55877 bp Feature: gene Location: 55868-57289 bp Feature: domain Description: DUF1566 Location: 55940-56084 bp Feature: domain Description: DUF1 566 Location: 55940-56084 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 56273-57014 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 56273-5701 4 bp Feature: gene Location: 57302-57703 bp Feature: domain Description: Avd_like Location: 57341-57680 bp Feature: domain Description: Avd_like Location: 57341 -57680 bp Feature: gene Location: 57833-63862 bp Feature: domain Description: DUF1566 Location: 63548-63851 bp Feature: domain Description: DUF1 566 Location: 63548-63851 bp Feature: gene Location: 102025-102627 bp Feature: gene Location: 102710-102940 bp Feature: gene Location: 102937-104205 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 103126-103762 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 1 031 26-1 03762 bp Feature: gene Location: 105224-105682 bp Feature: gene Location: 105717-106706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), RVT-DGRs, Avd_like (cd16376), RVT-UG27

Seq: QRBY01000015.1 Bacteroides ovatus strain ELH-B2 scaffold15, whole genome shotgun sequence (175240 bp)
Overview 1 RT 1: 25966-34446 bp Neighborhood of RT #1 [25966, 38567] HTH_28 RVT-GII MethyltransfD12 RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 25966-26118 bp Feature: gene Location: 26296-26586 bp Feature: domain Description: HTH_28 Location: 26320-26464 bp Feature: domain Description: HTH_2 8 Location: 2 632 0-2 6464 bp Feature: gene Location: 26707-26904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26710-26902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6710-2 6902 bp Feature: gene Location: 26934-27143 bp Feature: gene Location: 27438-28292 bp Feature: domain Description: MethyltransfD12 Location: 27474-28047 bp Feature: domain Description: MethyltransfD12 Location: 2 7474-2 8047 bp Feature: gene Location: 29105-29347 bp Feature: gene Location: 29527-30012 bp Feature: gene Location: 30009-31313 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 30222-30816 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 302 2 2 -30816 bp Feature: gene Location: 31430-31633 bp Feature: gene Location: 31830-38567 bp Feature: domain Description: Laminin_G_3 Location: 33291-33369 bp Feature: domain Description: Laminin_G_3 Location: 332 91-33369 bp Feature: domain Description: Laminin_G_3 Location: 34020-34446 bp Feature: domain Description: Laminin_G_3 Location: 3402 0-34446 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_28 (pfam13518), RVT-GII, MethyltransfD12 (pfam02086), RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: QRBY01000023.1 Bacteroides ovatus strain ELH-B2 scaffold23, whole genome shotgun sequence (106443 bp)
Overview 1 RT 1: 22874-28813 bp Neighborhood of RT #1 [22874, 28938] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF3876 DUF4141 SesA Feature: gene Location: 22874-25273 bp Feature: domain Description: Bac_Flav_CT_G Location: 22877-25265 bp Feature: domain Description: Bac_Flav_CT_G Location: 22877-25265 bp Feature: gene Location: 25287-25439 bp Feature: gene Location: 25821-27644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26085-26907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26085-26907 bp Feature: domain Description: Intron_maturas2 Location: 27078-27285 bp Feature: domain Description: Intron_maturas2 Location: 27078-27285 bp Feature: domain Description: HNHc Note: nucleases Location: 27435-27606 bp Feature: domain Description: HNHc Note: nucleases Location: 2743 5-27606 bp Feature: gene Location: 27905-28285 bp Feature: domain Description: DUF3876 Location: 27986-28250 bp Feature: domain Description: DUF3 876 Location: 27986-28250 bp Feature: gene Location: 28309-28938 bp Feature: domain Description: DUF4141 Location: 28321-28477 bp Feature: domain Description: DUF4141 Location: 283 21-28477 bp Feature: domain Description: SesA Location: 28483-28813 bp Feature: domain Description: SesA Location: 28483 -28813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF3876 (pfam12992), DUF4141 (pfam13605), SesA (pfam17107)

Seq: QRBY01000037.1 Bacteroides ovatus strain ELH-B2 scaffold37, whole genome shotgun sequence (56335 bp)
Overview 1 RT 1: 24584-29946 bp Neighborhood of RT #1 [24584, 29960] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 24584-25216 bp Feature: domain Description: DUF4141 Location: 24608-24755 bp Feature: domain Description: DUF4 14 1 Location: 24 608-24 755 bp Feature: gene Location: 25237-25716 bp Feature: domain Description: Bac_Flav_CT_G Location: 25270-25702 bp Feature: domain Description: Bac_Flav_CT_G Location: 25270-25702 bp Feature: gene Location: 25773-27584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26037-26859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26037-26859 bp Feature: domain Description: Intron_maturas2 Location: 26934-27249 bp Feature: domain Description: Intron_maturas2 Location: 26934 -2724 9 bp Feature: domain Description: HNHc Note: nucleases Location: 27405-27555 bp Feature: domain Description: HNHc Note: nucleases Location: 274 05-27555 bp Feature: gene Location: 27930-28103 bp Feature: gene Location: 28131-29960 bp Feature: domain Description: Bac_Flav_CT_G Location: 28134-29946 bp Feature: domain Description: Bac_Flav_CT_G Location: 28134 -2994 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QRBY01000005.1 Bacteroides ovatus strain ELH-B2 scaffold5, whole genome shotgun sequence (316735 bp)
Overview 1 RT 1: 152246-155749 bp Neighborhood of RT #1 [152246, 155778] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 152246-152539 bp Feature: gene Location: 152738-153016 bp Feature: gene Location: 152979-154400 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 153354-154056 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 15 335 4-15 405 6 bp Feature: gene Location: 154415-154822 bp Feature: domain Description: Avd_like Location: 154448-154757 bp Feature: domain Description: Avd_like Location: 15 4448-15 475 7 bp Feature: gene Location: 154969-155778 bp Feature: domain Description: DUF1566 Location: 155500-155749 bp Feature: domain Description: DUF15 66 Location: 15 5 5 00-15 5 749 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: QRBY01000056.1 Bacteroides ovatus strain ELH-B2 scaffold56, whole genome shotgun sequence (9934 bp)
Overview 1 RT 1: 698-9512 bp Neighborhood of RT #1 [698, 9862] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 KOG1803 MTES_1575 DUF3320 Feature: gene Location: 698-1522 bp Feature: domain Description: PDDEXK_2 Location: 719-1397 bp Feature: domain Description: PDDEXK_2 Location: 719-1397 bp Feature: gene Location: 1689-3896 bp Feature: gene Location: 4102-5232 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4423-4966 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4423-496 6 bp Feature: gene Location: 5234-9862 bp Feature: domain Description: DUF4011 Location: 5357-5648 bp Feature: domain Description: DUF4011 Location: 5357-56 48 bp Feature: domain Description: DEXXQc_SF1 Location: 5987-6956 bp Feature: domain Description: DEXXQc_SF1 Location: 5987-6 956 bp Feature: domain Description: DEXXQc_SF1 Location: 7415-8174 bp Feature: domain Description: DEXXQc_SF1 Location: 7415-8174 bp Feature: domain Description: KOG1803 Location: 8309-8687 bp Feature: domain Description: KOG1803 Location: 8309-86 87 bp Feature: domain Description: MTES_1575 Location: 8846-9131 bp Feature: domain Description: MTES_1575 Location: 8846 -9131 bp Feature: domain Description: DUF3320 Location: 9371-9512 bp Feature: domain Description: DUF3320 Location: 9371-9512 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF3320 (pfam11784)

Seq: QRBY01000066.1 Bacteroides ovatus strain ELH-B2 scaffold66, whole genome shotgun sequence (2497 bp)
Overview 1 RT 1: 203-2048 bp Neighborhood of RT #1 [203, 2380] matK RVT-GII Intron_maturas2 Feature: gene Location: 203-472 bp Feature: gene Location: 578-2380 bp Feature: domain Description: matK Location: 647-734 bp Feature: domain Description: matK Location: 647 -7 34 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 842-1664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 842-1664 bp Feature: domain Description: Intron_maturas2 Location: 1814-2048 bp Feature: domain Description: Intron_maturas2 Location: 1814-2048 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348)