myRT

myRT report for GCA_003363295.1_ASM336329v1

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Seq: QRCL01000024.1 Citrobacter freundii strain TV1575CF LRAT56_S56_L001_R1_001__paired__contig_24, whole genome shotgun sequence (57397 bp)
Overview 1 RT 1: 18928-24183 bp Neighborhood of RT #1 [18928, 24188] HTH_38 Tra8 PHA02517 RVT-GII GIIM PHA02517 fruct_sucro_rep Feature: gene Location: 18928-20079 bp Feature: domain Description: HTH_38 Location: 18943-19051 bp Feature: domain Description: HTH_38 Location: 1 8943-1 9051 bp Feature: domain Description: Tra8 Location: 19087-20068 bp Feature: domain Description: Tra8 Location: 1 9087-20068 bp Feature: gene Location: 20210-20635 bp Feature: domain Description: PHA02517 Location: 20234-20570 bp Feature: domain Description: PHA0251 7 Location: 20234-20570 bp Feature: gene Location: 21227-22750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21500-22232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 500-22232 bp Feature: domain Description: GIIM Note: maturase Location: 22307-22529 bp Feature: domain Description: GIIM Note: maturase Location: 22307-22529 bp Feature: gene Location: 22908-23072 bp Feature: domain Description: PHA02517 Location: 22947-23040 bp Feature: domain Description: PHA0251 7 Location: 22947-23040 bp Feature: gene Location: 23184-24188 bp Feature: domain Description: fruct_sucro_rep Location: 23205-24183 bp Feature: domain Description: fruct_sucro_rep Location: 23205-241 83 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), Tra8 (COG2826), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), fruct_sucro_rep (TIGR02417)

Seq: QRCL01000004.1 Citrobacter freundii strain TV1575CF LRAT56_S56_L001_R1_001__paired__contig_4, whole genome shotgun sequence (321373 bp)
Overview 1 RT 1: 555-4948 bp Neighborhood of RT #1 [555, 4948] RVT-Retrons PRK09692 Feature: gene Location: 555-716 bp Feature: gene Location: 990-1970 bp Feature: gene Location: 1957-2883 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2062-2644 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 062 -2 644 bp Feature: gene Location: 3399-4565 bp Feature: domain Description: PRK09692 Location: 3408-4557 bp Feature: domain Description: PRK09692 Location: 3408-4557 bp Feature: gene Location: 4688-4948 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK09692 (Integrase; provisional)