myRT

myRT report for GCA_003363555.1_ASM336355v1

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Seq: QTKM01000053.1 Klebsiella pneumoniae strain SL50 contig53, whole genome shotgun sequence (7570 bp)
Overview 1 RT 1: 2729-7171 bp Neighborhood of RT #1 [2729, 7173] umuC PRK10276 RVT-GII InsA DDE_Tnp_IS1 Feature: gene Location: 2729-4000 bp Feature: domain Description: umuC Location: 2732-3992 bp Feature: domain Description: umuC Location: 2732-3992 bp Feature: gene Location: 4000-4812 bp Feature: domain Description: PRK10276 Location: 4432-4795 bp Feature: domain Description: PRK1 0276 Location: 4432-4795 bp Feature: gene Location: 4837-6324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5242-5932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5242-5932 bp Feature: gene Location: 6476-6751 bp Feature: domain Description: InsA Location: 6479-6743 bp Feature: domain Description: InsA Location: 6479-6743 bp Feature: gene Location: 6670-7173 bp Feature: domain Description: DDE_Tnp_IS1 Location: 6781-7171 bp Feature: domain Description: DDE_Tnp_IS1 Location: 6781 -71 71 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, InsA (COG3677), DDE_Tnp_IS1 (pfam03400)

Seq: QTKM01000006.1 Klebsiella pneumoniae strain SL50 contig6, whole genome shotgun sequence (235789 bp)
Overview 1 RT 1: 28918-33801 bp Neighborhood of RT #1 [28918, 33803] umuC RVT-UG11 PRK09951 PRK15110 Feature: gene Location: 28918-30183 bp Feature: domain Description: umuC Location: 28921-30181 bp Feature: domain Description: umuC Location: 2 892 1-30181 bp Feature: gene Location: 30408-30596 bp Feature: gene Location: 30856-31764 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 31129-31585 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 3112 9-31585 bp Feature: gene Location: 31965-32633 bp Feature: domain Description: PRK09951 Location: 31968-32631 bp Feature: domain Description: PRK09951 Location: 31968-32 631 bp Feature: gene Location: 32838-33803 bp Feature: domain Description: PRK15110 Location: 32841-33801 bp Feature: domain Description: PRK15110 Location: 32 841-33801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), RVT-UG11, PRK09951 (hypothetical protein; Provisional), PRK15110 (peptide ABC transporter permease SapB)

Seq: QTKM01000061.1 Klebsiella pneumoniae strain SL50 contig62, whole genome shotgun sequence (2925 bp)
Overview 1 RT 1: 1-1517 bp Neighborhood of RT #1 [1, 1517] RVT-Retrons CspC Feature: gene Location: 1-837 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4-397 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4-3 97 bp Feature: gene Location: 842-1045 bp Feature: domain Description: CspC Location: 845-1040 bp Feature: domain Description: CspC Location: 845-1040 bp Feature: gene Location: 1254-1517 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, CspC (COG1278)