myRT

myRT report for GCA_003363715.1_ASM336371v1

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Seq: QREV01000111.1 Parabacteroides sp. 426-9 Scaffold111, whole genome shotgun sequence (2276 bp)
Overview 1 RT 1: 118-2204 bp Neighborhood of RT #1 [118, 2204] RVT_N RVT-GII GIIM Feature: gene Location: 118-1695 bp Feature: domain Description: RVT_N Location: 151-385 bp Feature: domain Description: RVT_N Location: 1 51 -385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 439-1141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 439-1 1 41 bp Feature: domain Description: GIIM Note: maturase Location: 1216-1447 bp Feature: domain Description: GIIM Note: maturase Location: 1 21 6-1 447 bp Feature: gene Location: 1977-2204 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QREV01000041.1 Parabacteroides sp. 426-9 Scaffold41, whole genome shotgun sequence (46247 bp)
Overview 1 RT 1: 25444-29965 bp Neighborhood of RT #1 [25444, 29965] Cas6b_N Cas6b_C Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Feature: gene Location: 25444-26109 bp Feature: domain Description: Cas6b_N Location: 25465-25723 bp Feature: domain Description: Cas6b_N Location: 2 5465-2 572 3 bp Feature: domain Description: Cas6b_C Location: 25774-26101 bp Feature: domain Description: Cas6b_C Location: 2 5774-2 6101 bp Feature: gene Location: 26341-26628 bp Feature: domain Description: Cas2_I_II_III Location: 26365-26575 bp Feature: domain Description: Cas2 _I_II_III Location: 2 6365-2 6575 bp Feature: gene Location: 26628-28919 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 26862-27471 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 6862 -2 7471 bp Feature: domain Description: Cas1_I-II-III Location: 27924-28875 bp Feature: domain Description: Cas1_I-II-III Location: 2 792 4-2 8875 bp Feature: gene Location: 29341-29625 bp Feature: gene Location: 29615-29965 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas6b_N (pfam17955), Cas6b_C, Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656)

Seq: QREV01000080.1 Parabacteroides sp. 426-9 Scaffold80, whole genome shotgun sequence (15863 bp)
Overview 1 RT 1: 717-5692 bp Neighborhood of RT #1 [717, 5703] YhaK PRK07107 RVT-GII GIIM thioredoxin Feature: gene Location: 717-1424 bp Feature: domain Description: YhaK Location: 747-1413 bp Feature: domain Description: YhaK Location: 747-1413 bp Feature: gene Location: 1644-3137 bp Feature: domain Description: PRK07107 Location: 1647-3132 bp Feature: domain Description: PRK07107 Location: 1647-3 13 2 bp Feature: gene Location: 3254-4660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3596-4214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 596-4214 bp Feature: domain Description: GIIM Note: maturase Location: 4271-4475 bp Feature: domain Description: GIIM Note: maturase Location: 4271-4475 bp Feature: gene Location: 4736-4882 bp Feature: gene Location: 5350-5703 bp Feature: domain Description: thioredoxin Location: 5422-5692 bp Feature: domain Description: thioredoxin Location: 5422-5692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhaK (COG1741), PRK07107 (IMP dehydrogenase), RVT-GII, GIIM (pfam08388), thioredoxin (TIGR01068)