myRT

myRT report for GCA_003367175.1_ASM336717v1

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Seq: QRGA01000001.1 Paraburkholderia sp. DHOM06 scaffold1, whole genome shotgun sequence (893519 bp)
Overview 1 RT 1: 889842-893518 bp Neighborhood of RT #1 [889842, 893518] SLR SLR RVT-GII GIIM SLR Feature: gene Location: 889842-890021 bp Feature: gene Location: 890089-890526 bp Feature: domain Description: SLR Location: 890092-890323 bp Feature: domain Description: SLR Location: 890092-890323 bp Feature: domain Description: SLR Location: 890332-890503 bp Feature: domain Description: SLR Location: 890332-890503 bp Feature: gene Location: 890669-892201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 890942-891680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 890942-891 680 bp Feature: domain Description: GIIM Note: maturase Location: 891776-891953 bp Feature: domain Description: GIIM Note: maturase Location: 891 776-891 953 bp Feature: gene Location: 892848-893204 bp Feature: domain Description: SLR Location: 892983-893193 bp Feature: domain Description: SLR Location: 892983-8931 93 bp Feature: gene Location: 893390-893518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLR (sd00010), RVT-GII, GIIM (pfam08388)

Seq: QRGA01000022.1 Paraburkholderia sp. DHOM06 scaffold22, whole genome shotgun sequence (106307 bp)
Overview 1 RT 1: 21688-25836 bp Neighborhood of RT #1 [21688, 25844] LysR KOG3216 RVT-GII GIIM YifN DUF2384 Feature: gene Location: 21688-22563 bp Feature: domain Description: LysR Location: 21700-22543 bp Feature: domain Description: LysR Location: 2 1700-2 2 543 bp Feature: gene Location: 22658-23104 bp Feature: domain Description: KOG3216 Location: 22667-23057 bp Feature: domain Description: KOG32 16 Location: 2 2 667-2 3057 bp Feature: gene Location: 23158-24249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23275-23887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 32 75-2 3887 bp Feature: domain Description: GIIM Note: maturase Location: 23947-24103 bp Feature: domain Description: GIIM Note: maturase Location: 2 3947-2 4103 bp Feature: gene Location: 24675-25415 bp Feature: domain Description: YifN Location: 24867-25269 bp Feature: domain Description: YifN Location: 2 4867-2 52 69 bp Feature: gene Location: 25398-25844 bp Feature: domain Description: DUF2384 Location: 25677-25836 bp Feature: domain Description: DUF2 384 Location: 2 5677-2 5836 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysR (COG0583), KOG3216 (KOG3216, Diamine acetyltransferase ), RVT-GII, GIIM (pfam08388), YifN (COG3692), DUF2384 (pfam09722)

Seq: QRGA01000005.1 Paraburkholderia sp. DHOM06 scaffold5, whole genome shotgun sequence (335920 bp)
Overview 1 RT 1: 90997-94447 bp Neighborhood of RT #1 [90997, 94447] ASCH_ASC-1_like ASCH_ASC-1_like RVT-DGRs Avd_like Feature: gene Location: 90997-91467 bp Feature: domain Description: ASCH_ASC-1_like Location: 91000-91045 bp Feature: domain Description: ASCH_ASC-1_like Location: 91000-91045 bp Feature: domain Description: ASCH_ASC-1_like Location: 91081-91369 bp Feature: domain Description: ASCH_ASC-1_like Location: 91081-913 69 bp Feature: gene Location: 91464-92222 bp Feature: gene Location: 92219-93568 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 92654-93341 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 92654-93 3 41 bp Feature: gene Location: 93561-93941 bp Feature: domain Description: Avd_like Location: 93588-93894 bp Feature: domain Description: Avd_like Location: 93 588-93 894 bp Feature: gene Location: 93956-94447 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ASCH_ASC-1_like (cd06554), RVT-DGRs, Avd_like (cd16376)

Seq: QRGA01000008.1 Paraburkholderia sp. DHOM06 scaffold8, whole genome shotgun sequence (394941 bp)
Overview 1 RT 1: 28075-32905 bp Neighborhood of RT #1 [28075, 32961] UPF0489 RVT-Retrons Trypsin_2 VapI Feature: gene Location: 28075-28863 bp Feature: domain Description: UPF0489 Location: 28114-28672 bp Feature: domain Description: UPF04 89 Location: 28114 -28672 bp Feature: gene Location: 28995-29669 bp Feature: gene Location: 30053-31879 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30200-30815 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30200-30815 bp Feature: domain Description: Trypsin_2 Location: 31286-31754 bp Feature: domain Description: Trypsin_2 Location: 31286-31754 bp Feature: gene Location: 31992-32387 bp Feature: gene Location: 32638-32961 bp Feature: domain Description: VapI Location: 32656-32905 bp Feature: domain Description: VapI Location: 32656-32905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UPF0489 (pfam12640), RVT-Retrons, Trypsin_2 (pfam13365), VapI (COG3093)