myRT

myRT report for GCA_003382625.2_ASM338262v2

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Seq: QHJV02000014.1 Pectobacterium aquaticum strain A101-S19-F16 Pectobacterium_aquaticum_A101-S19-F16_contig_14, whole genome shotgun sequence (151011 bp)
Overview 1 RT 1: 126332-130026 bp Neighborhood of RT #1 [126332, 130040] W phage_P2_V RVT-Retrons Phage_tail_S Feature: gene Location: 126332-126676 bp Feature: domain Description: W Location: 126356-126650 bp Feature: domain Description: W Location: 1 26356-1 26650 bp Feature: gene Location: 126673-127314 bp Feature: domain Description: phage_P2_V Location: 126706-127303 bp Feature: domain Description: phage_P2_V Location: 1 26706-1 27303 bp Feature: gene Location: 127669-128844 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 127810-128380 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 2781 0-1 28380 bp Feature: gene Location: 128886-129086 bp Feature: gene Location: 129585-130040 bp Feature: domain Description: Phage_tail_S Location: 129594-130026 bp Feature: domain Description: Phage_tail_S Location: 1 29594-1 30026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT W (PHA02516), phage_P2_V (TIGR01644), RVT-Retrons, Phage_tail_S (pfam05069)

Seq: QHJV02000031.1 Pectobacterium aquaticum strain A101-S19-F16 Pectobacterium_aquaticum_A101-S19-F16_contig_31, whole genome shotgun sequence (8395 bp)
Overview 1 RT 1: 5460-8070 bp Neighborhood of RT #1 [5460, 8393] PRK11409 YoeB_toxin RVT-Retrons AAA_21 AAA_21 Feature: gene Location: 5460-5738 bp Feature: domain Description: PRK11409 Location: 5490-5736 bp Feature: domain Description: PRK11409 Location: 5490-5736 bp Feature: gene Location: 5801-5989 bp Feature: domain Description: YoeB_toxin Location: 5804-5987 bp Feature: domain Description: YoeB_toxin Location: 5804-5987 bp Feature: gene Location: 6367-7338 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6499-7066 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6499-7066 bp Feature: gene Location: 7335-8393 bp Feature: domain Description: AAA_21 Location: 7434-7722 bp Feature: domain Description: AAA_2 1 Location: 7434-772 2 bp Feature: domain Description: AAA_21 Location: 7830-8070 bp Feature: domain Description: AAA_2 1 Location: 7830-8070 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11409 (YoeB-YefM toxin-antitoxin system antitoxin YefM), YoeB_toxin (pfam06769), RVT-Retrons, AAA_21 (pfam13304)

Seq: QHJV02000009.1 Pectobacterium aquaticum strain A101-S19-F16 Pectobacterium_aquaticum_A101-S19-F16_contig_9, whole genome shotgun sequence (254301 bp)
Overview 1 RT 1: 245097-253733 bp Neighborhood of RT #1 [245097, 253744] DnaJ_CXXCXGXG RVT-GII Intron_maturas2 HNHc PRK09010 uvrA Feature: gene Location: 245097-246851 bp Feature: gene Location: 247043-247267 bp Feature: domain Description: DnaJ_CXXCXGXG Location: 247061-247220 bp Feature: domain Description: DnaJ_CXXCXGXG Location: 247061-247220 bp Feature: gene Location: 247581-249395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 247782-248619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 247782-248619 bp Feature: domain Description: Intron_maturas2 Location: 248799-249006 bp Feature: domain Description: Intron_maturas2 Location: 248799-249006 bp Feature: domain Description: HNHc Note: nucleases Location: 249195-249342 bp Feature: domain Description: HNHc Note: nucleases Location: 249195-2493 42 bp Feature: gene Location: 250102-250659 bp Feature: domain Description: PRK09010 Location: 250105-250657 bp Feature: domain Description: PRK09010 Location: 250105-250657 bp Feature: gene Location: 250910-253744 bp Feature: domain Description: uvrA Location: 250913-253733 bp Feature: domain Description: uvrA Location: 250913 -253 73 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DnaJ_CXXCXGXG (pfam00684), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK09010 (single-stranded DNA-binding protein; Provisional), uvrA (PRK00349)