myRT

myRT report for GCA_003384985.1_ASM338498v1

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Seq: QTZW01000030.1 Klebsiella variicola strain BD_DM_322 NODE_30_length_43582_cov_12.1553_pilon, whole genome shotgun sequence (43582 bp)
Overview 1 RT 1: 35486-43109 bp Neighborhood of RT #1 [35486, 43141] HsdS RMtype1_S_Eco2747I-TRD2-CR2_like RMtype1_S_Eco2747I-TRD2-CR2_like PRK04247 RVT-UG5 IncA Peptidase_M78 Feature: gene Location: 35486-37162 bp Feature: domain Description: HsdS Location: 35492-35825 bp Feature: domain Description: HsdS Location: 35492-35825 bp Feature: domain Description: RMtype1_S_Eco2747I-TRD2-CR2_like Location: 36059-36278 bp Feature: domain Description: RMtype1 _S_Eco2747I-TRD2-CR2_like Location: 36059-36278 bp Feature: domain Description: RMtype1_S_Eco2747I-TRD2-CR2_like Location: 36578-37139 bp Feature: domain Description: RMtype1 _S_Eco2747I-TRD2-CR2_like Location: 36578-371 39 bp Feature: gene Location: 37173-38273 bp Feature: domain Description: PRK04247 Location: 37236-37464 bp Feature: domain Description: PRK04247 Location: 37236-37464 bp Feature: gene Location: 38453-41470 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 38951-39446 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 38951 -39446 bp Feature: gene Location: 41919-42593 bp Feature: domain Description: IncA Location: 42210-42552 bp Feature: domain Description: IncA Location: 4221 0-42552 bp Feature: gene Location: 42596-43141 bp Feature: domain Description: Peptidase_M78 Location: 42746-43109 bp Feature: domain Description: Peptidase_M78 Location: 42746-431 09 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdS (COG0732), RMtype1_S_Eco2747I-TRD2-CR2_like (cd17247), PRK04247 (endonuclease NucS), RVT-UG5, IncA, Peptidase_M78 (pfam06114)

Seq: QTZW01000046.1 Klebsiella variicola strain BD_DM_322 NODE_46_length_9598_cov_9.43311_pilon, whole genome shotgun sequence (9598 bp)
Overview 1 RT 1: 1500-5807 bp Neighborhood of RT #1 [1500, 5807] HTH_23 HTH_33 DDE_3 RVT-Retrons Feature: gene Location: 1500-2531 bp Feature: domain Description: HTH_23 Location: 1581-1719 bp Feature: domain Description: HTH_2 3 Location: 1581-1719 bp Feature: domain Description: HTH_33 Location: 1824-1971 bp Feature: domain Description: HTH_33 Location: 182 4-1971 bp Feature: domain Description: DDE_3 Location: 2031-2448 bp Feature: domain Description: DDE_3 Location: 2 031-2 448 bp Feature: gene Location: 2735-3610 bp Feature: gene Location: 3701-4642 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3869-4418 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3869-4418 bp Feature: gene Location: 4699-4863 bp Feature: gene Location: 4929-5807 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-Retrons

Seq: QTZW01000049.1 Klebsiella variicola strain BD_DM_322 NODE_49_length_7464_cov_5.0075_pilon, whole genome shotgun sequence (7475 bp)
Overview 1 RT 1: 2-2295 bp Neighborhood of RT #1 [2, 2315] RVT-GII HHA Feature: gene Location: 2-145 bp Feature: gene Location: 172-1548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 577-1267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 577-1267 bp Feature: gene Location: 1573-1974 bp Feature: gene Location: 2064-2315 bp Feature: domain Description: HHA Location: 2112-2295 bp Feature: domain Description: HHA Location: 2112-2295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HHA (pfam05321)