myRT

myRT report for GCA_003385025.1_ASM338502v1

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Seq: QTZY01000039.1 Klebsiella variicola strain BD_DM_395 NODE_39_length_26251_cov_12.1576_pilon, whole genome shotgun sequence (26251 bp)
Overview 1 RT 1: 15039-22662 bp Neighborhood of RT #1 [15039, 22694] HsdS RMtype1_S_Eco2747I-TRD2-CR2_like RMtype1_S_Eco2747I-TRD2-CR2_like PRK04247 RVT-UG5 IncA Peptidase_M78 Feature: gene Location: 15039-16715 bp Feature: domain Description: HsdS Location: 15045-15378 bp Feature: domain Description: HsdS Location: 1 5045-1 5378 bp Feature: domain Description: RMtype1_S_Eco2747I-TRD2-CR2_like Location: 15612-15831 bp Feature: domain Description: RMtype1 _S_Eco2747I-TRD2-CR2_like Location: 1 561 2-1 5831 bp Feature: domain Description: RMtype1_S_Eco2747I-TRD2-CR2_like Location: 16131-16692 bp Feature: domain Description: RMtype1 _S_Eco2747I-TRD2-CR2_like Location: 1 61 31 -1 6692 bp Feature: gene Location: 16726-17826 bp Feature: domain Description: PRK04247 Location: 16789-17017 bp Feature: domain Description: PRK04247 Location: 1 6789-1 701 7 bp Feature: gene Location: 18006-21023 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 18504-18999 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 8504-1 8999 bp Feature: gene Location: 21442-22146 bp Feature: domain Description: IncA Location: 21763-22105 bp Feature: domain Description: IncA Location: 21 763-221 05 bp Feature: gene Location: 22146-22694 bp Feature: domain Description: Peptidase_M78 Location: 22299-22662 bp Feature: domain Description: Peptidase_M78 Location: 22299-22662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdS (COG0732), RMtype1_S_Eco2747I-TRD2-CR2_like (cd17247), PRK04247 (endonuclease NucS), RVT-UG5, IncA, Peptidase_M78 (pfam06114)

Seq: QTZY01000058.1 Klebsiella variicola strain BD_DM_395 NODE_58_length_6086_cov_6.88874_pilon, whole genome shotgun sequence (6086 bp)
Overview 1 RT 1: 3-4947 bp Neighborhood of RT #1 [3, 5030] DUF4756 RVT-Retrons HTH_23 HTH_33 DDE_3 Feature: gene Location: 3-488 bp Feature: domain Description: DUF4756 Location: 12-483 bp Feature: domain Description: DUF4756 Location: 12 -483 bp Feature: gene Location: 723-1601 bp Feature: gene Location: 1888-2829 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2056-2605 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 056-2 605 bp Feature: gene Location: 2920-3795 bp Feature: gene Location: 3999-5030 bp Feature: domain Description: HTH_23 Location: 4080-4218 bp Feature: domain Description: HTH_2 3 Location: 4080-42 18 bp Feature: domain Description: HTH_33 Location: 4323-4470 bp Feature: domain Description: HTH_33 Location: 432 3-4470 bp Feature: domain Description: DDE_3 Location: 4530-4947 bp Feature: domain Description: DDE_3 Location: 4530-4947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4756 (pfam15948), RVT-Retrons, HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358)

Seq: QTZY01000079.1 Klebsiella variicola strain BD_DM_395 NODE_79_length_3567_cov_4.77936_pilon, whole genome shotgun sequence (3567 bp)
Overview 1 RT 1: 1-3566 bp Neighborhood of RT #1 [1, 3566] umuC PRK10276 RVT-GII Feature: gene Location: 1-1191 bp Feature: domain Description: umuC Location: 4-1192 bp Feature: domain Description: umuC Location: 4-1192 bp Feature: gene Location: 1191-1865 bp Feature: domain Description: PRK10276 Location: 1443-1851 bp Feature: domain Description: PRK10276 Location: 1443 -1851 bp Feature: gene Location: 2019-3386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2424-2955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2424-2955 bp Feature: gene Location: 3423-3566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII