myRT

myRT report for GCA_003385375.1_ASM338537v1

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Seq: QLJO01000021.1 Escherichia coli strain CB690 NODE_21_length_77358_cov_20.7557, whole genome shotgun sequence (77358 bp)
Overview 1 RT 1: 925-4395 bp Neighborhood of RT #1 [925, 4502] Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 925-1227 bp Feature: domain Description: Arm-DNA-bind_3 Location: 934-1186 bp Feature: domain Description: Arm-DNA-bind_3 Location: 934-1 1 86 bp Feature: gene Location: 1411-1656 bp Feature: gene Location: 1682-2614 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1784-2378 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 784-2378 bp Feature: gene Location: 2616-3602 bp Feature: gene Location: 4230-4502 bp Feature: domain Description: PRK09678 Location: 4239-4395 bp Feature: domain Description: PRK09678 Location: 4239-4395 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional), Arm-DNA-bind_3 (pfam13356)

Seq: QLJO01000099.1 Escherichia coli strain CB690 NODE_31_length_48272_cov_20.9683, whole genome shotgun sequence (48272 bp)
Overview 1 RT 1: 3716-7444 bp Neighborhood of RT #1 [3716, 7449] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 3716-3922 bp Feature: gene Location: 4256-4465 bp Feature: gene Location: 4600-6501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4867-5698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4867-5698 bp Feature: domain Description: Intron_maturas2 Location: 5812-6070 bp Feature: domain Description: Intron_maturas2 Location: 5812 -6070 bp Feature: domain Description: HNHc Note: nucleases Location: 6244-6406 bp Feature: domain Description: HNHc Note: nucleases Location: 62 44-6406 bp Feature: gene Location: 6696-7148 bp Feature: domain Description: PRK13732 Location: 6702-7146 bp Feature: domain Description: PRK13732 Location: 6702 -7146 bp Feature: gene Location: 7216-7449 bp Feature: domain Description: DUF905 Location: 7246-7444 bp Feature: domain Description: DUF905 Location: 72 46-7444 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: QLJO01000129.1 Escherichia coli strain CB690 NODE_98_length_1477_cov_45.9711, whole genome shotgun sequence (1477 bp)
Overview 1 RT 1: 93-1230 bp Neighborhood of RT #1 [93, 1475] RVT-GII GIIM Feature: gene Location: 93-1475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 225-957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 225-957 bp Feature: domain Description: GIIM Note: maturase Location: 1032-1230 bp Feature: domain Description: GIIM Note: maturase Location: 103 2-123 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)