myRT

myRT report for GCA_003386115.1_ASM338611v1

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Seq: QREJ01000001.1 Paraburkholderia sp. BL27I4N3 Ga0242543_11, whole genome shotgun sequence (8193802 bp)
Overview 1 RT 1: 1600930-1604876 bp 2 RT 2: 1615801-1621112 bp 3 RT 3: 2589661-2593334 bp 4 RT 4: 3096872-3103007 bp 5 RT 5: 4222873-4229382 bp Neighborhood of RT #1 [1600930, 1604893] USP_Like Rve RVT-GII GIIM Rve DUF3564 Neighborhood of RT #2 [1615801, 1621177] IucD HTH_Tnp_1 RVT-GII GIIM GIIM IS5 Neighborhood of RT #3 [2589661, 2593351] RVT-GII GIIM COG4803 Neighborhood of RT #4 [3096872, 3103018] PssA PRK05305 RVT_N RVT-GII GIIM HNHc PRK05479 ilvH Neighborhood of RT #5 [4222873, 4229456] 2A0305 GyrI-like RVT-Retrons DUF3375 DUF4194 Feature: gene Location: 1600930-1601382 bp Feature: domain Description: USP_Like Location: 1600942-1601344 bp Feature: domain Description: USP_Like Location: 1 600942-1 601 344 bp Feature: gene Location: 1601398-1601808 bp Feature: domain Description: Rve Location: 1601401-1601755 bp Feature: domain Description: Rve Location: 1 601 401 -1 601 755 bp Feature: gene Location: 1601904-1603457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1602177-1602915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6021 77-1 60291 5 bp Feature: domain Description: GIIM Note: maturase Location: 1603008-1603188 bp Feature: domain Description: GIIM Note: maturase Location: 1 603008-1 6031 88 bp Feature: gene Location: 1604083-1604415 bp Feature: domain Description: Rve Location: 1604155-1604377 bp Feature: domain Description: Rve Location: 1 6041 55-1 604377 bp Feature: gene Location: 1604519-1604893 bp Feature: domain Description: DUF3564 Location: 1604522-1604876 bp Feature: domain Description: DUF3564 Location: 1 604522-1 604876 bp Feature: gene Location: 1615801-1617123 bp Feature: domain Description: IucD Location: 1615807-1617016 bp Feature: domain Description: IucD Location: 1 61 5807-1 61 701 6 bp Feature: gene Location: 1617611-1617871 bp Feature: domain Description: HTH_Tnp_1 Location: 1617647-1617836 bp Feature: domain Description: HTH_Tnp_1 Location: 1 61 7647-1 61 7836 bp Feature: gene Location: 1618421-1619767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1618625-1619285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 61 8625-1 61 9285 bp Feature: domain Description: GIIM Note: maturase Location: 1619366-1619597 bp Feature: domain Description: GIIM Note: maturase Location: 1 61 9366-1 61 9597 bp Feature: gene Location: 1619831-1620088 bp Feature: domain Description: GIIM Note: maturase Location: 1619840-1620002 bp Feature: domain Description: GIIM Note: maturase Location: 1 61 9840-1 620002 bp Feature: gene Location: 1620371-1621177 bp Feature: domain Description: IS5 Location: 1620545-1621112 bp Feature: domain Description: IS5 Location: 1 620545-1 621 1 1 2 bp Feature: gene Location: 2589661-2589855 bp Feature: gene Location: 2589877-2590278 bp Feature: gene Location: 2590530-2591813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2590779-2591442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2590779-2591 442 bp Feature: domain Description: GIIM Note: maturase Location: 2591511-2591727 bp Feature: domain Description: GIIM Note: maturase Location: 2591 51 1 -2591 727 bp Feature: gene Location: 2592310-2592597 bp Feature: gene Location: 2592686-2593351 bp Feature: domain Description: COG4803 Location: 2592821-2593334 bp Feature: domain Description: COG4803 Location: 2592821 -2593334 bp Feature: gene Location: 3096872-3097738 bp Feature: domain Description: PssA Location: 3097001-3097682 bp Feature: domain Description: PssA Location: 3097001 -3097682 bp Feature: gene Location: 3097762-3098400 bp Feature: domain Description: PRK05305 Location: 3097786-3098395 bp Feature: domain Description: PRK05305 Location: 3097786-3098395 bp Feature: gene Location: 3098518-3100119 bp Feature: RT Description: RVT_N Location: 3098521-3098719 bp Feature: RT Description: RVT_N Location: 3098521 -309871 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3098764-3099412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3098764-309941 2 bp Feature: domain Description: GIIM Note: maturase Location: 3099463-3099697 bp Feature: domain Description: GIIM Note: maturase Location: 3099463-3099697 bp Feature: domain Description: HNHc Note: nucleases Location: 3099940-3100081 bp Feature: domain Description: HNHc Note: nucleases Location: 3099940-31 00081 bp Feature: gene Location: 3101389-3102405 bp Feature: domain Description: PRK05479 Location: 3101392-3102373 bp Feature: domain Description: PRK05479 Location: 31 01 392-31 02373 bp Feature: gene Location: 3102527-3103018 bp Feature: domain Description: ilvH Location: 3102530-3103007 bp Feature: domain Description: ilvH Location: 31 02530-31 03007 bp Feature: gene Location: 4222873-4224330 bp Feature: domain Description: 2A0305 Location: 4222972-4224316 bp Feature: domain Description: 2A0305 Location: 4222972-422431 6 bp Feature: gene Location: 4224585-4225067 bp Feature: domain Description: GyrI-like Location: 4224600-4225062 bp Feature: domain Description: GyrI-like Location: 4224600-4225062 bp Feature: gene Location: 4225726-4227105 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4226191-4226830 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42261 91 -4226830 bp Feature: gene Location: 4227352-4228806 bp Feature: domain Description: DUF3375 Location: 4227385-4228798 bp Feature: domain Description: DUF3375 Location: 4227385-4228798 bp Feature: gene Location: 4228809-4229456 bp Feature: domain Description: DUF4194 Location: 4228872-4229382 bp Feature: domain Description: DUF41 94 Location: 4228872-4229382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT USP_Like (cd00293), Rve (COG3316), RVT-GII, GIIM (pfam08388), DUF3564 (pfam12087), IucD (COG3486), HTH_Tnp_1 (pfam01527), IS5 (COG3039), COG4803 (Uncharacterized membrane protein ), PssA (COG1183)
PRK05305 (phosphatidylserine decarboxylase family protein), RVT_N (pfam13655), HNHc (smart00507), PRK05479 (ketol-acid reductoisomerase; Provisional), ilvH (PRK11895), 2A0305 (TIGR00908), GyrI-like (pfam06445), RVT-Retrons, DUF3375 (pfam11855), DUF4194 (pfam13835)

Seq: QREJ01000002.1 Paraburkholderia sp. BL27I4N3 Ga0242543_12, whole genome shotgun sequence (595986 bp)
Overview 1 RT 1: 525184-527578 bp Neighborhood of RT #1 [525184, 527578] Rve RVT-GII GIIM Feature: gene Location: 525184-525390 bp Feature: gene Location: 525459-525968 bp Feature: domain Description: Rve Location: 525528-525927 bp Feature: domain Description: Rve Location: 52 552 8-52 592 7 bp Feature: gene Location: 525979-527223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 526183-526840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 6183-52 6840 bp Feature: domain Description: GIIM Note: maturase Location: 526918-527143 bp Feature: domain Description: GIIM Note: maturase Location: 52 6918-52 7143 bp Feature: gene Location: 527225-527374 bp Feature: gene Location: 527438-527578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII, GIIM (pfam08388)