myRT

myRT report for GCA_003386835.1_ASM338683v1

Download annotations/find similar RTs

Seq: QTZS01000031.1 Klebsiella variicola strain BD_DM_115 NODE_31_length_28052_cov_8.95649_pilon, whole genome shotgun sequence (28052 bp)
Overview 1 RT 1: 11917-15745 bp Neighborhood of RT #1 [11917, 15765] INT_Cre_C RVT-GII HHA Feature: gene Location: 11917-12234 bp Feature: gene Location: 12300-13436 bp Feature: domain Description: INT_Cre_C Location: 12723-13377 bp Feature: domain Description: INT_Cre_C Location: 1 2723-1 3377 bp Feature: gene Location: 13643-15010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14048-14579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4048-1 4579 bp Feature: gene Location: 15016-15183 bp Feature: gene Location: 15514-15765 bp Feature: domain Description: HHA Location: 15562-15745 bp Feature: domain Description: HHA Location: 1 5562-1 5745 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Cre_C (cd00799), RVT-GII, HHA (pfam05321)

Seq: QTZS01000032.1 Klebsiella variicola strain BD_DM_115 NODE_32_length_26361_cov_23.0242_pilon, whole genome shotgun sequence (26361 bp)
Overview 1 RT 1: 15039-22662 bp Neighborhood of RT #1 [15039, 22694] HsdS RMtype1_S_Eco2747I-TRD2-CR2_like RMtype1_S_Eco2747I-TRD2-CR2_like PRK04247 RVT-UG5 IncA Peptidase_M78 Feature: gene Location: 15039-16715 bp Feature: domain Description: HsdS Location: 15045-15378 bp Feature: domain Description: HsdS Location: 15045-15378 bp Feature: domain Description: RMtype1_S_Eco2747I-TRD2-CR2_like Location: 15612-15831 bp Feature: domain Description: RMtype1_S_Eco2 747I-TRD2 -CR2 _like Location: 15612 -15831 bp Feature: domain Description: RMtype1_S_Eco2747I-TRD2-CR2_like Location: 16131-16692 bp Feature: domain Description: RMtype1_S_Eco2 747I-TRD2 -CR2 _like Location: 16131-16692 bp Feature: gene Location: 16726-17826 bp Feature: domain Description: PRK04247 Location: 16789-17017 bp Feature: domain Description: PRK042 47 Location: 16789-17017 bp Feature: gene Location: 18006-21023 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 18504-18999 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 18504-18999 bp Feature: gene Location: 21442-22146 bp Feature: domain Description: IncA Location: 21763-22105 bp Feature: domain Description: IncA Location: 2 1763-2 2 105 bp Feature: gene Location: 22146-22694 bp Feature: domain Description: Peptidase_M78 Location: 22299-22662 bp Feature: domain Description: Peptidase_M78 Location: 2 2 2 99-2 2 662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdS (COG0732), RMtype1_S_Eco2747I-TRD2-CR2_like (cd17247), PRK04247 (endonuclease NucS), RVT-UG5, IncA, Peptidase_M78 (pfam06114)

Seq: QTZS01000034.1 Klebsiella variicola strain BD_DM_115 NODE_34_length_25450_cov_20.9919_pilon, whole genome shotgun sequence (25450 bp)
Overview 1 RT 1: 19168-24106 bp Neighborhood of RT #1 [19168, 24189] DUF4756 RVT-Retrons HTH_23 HTH_33 DDE_3 Feature: gene Location: 19168-19647 bp Feature: domain Description: DUF4756 Location: 19171-19642 bp Feature: domain Description: DUF4756 Location: 19171-19642 bp Feature: gene Location: 19882-20760 bp Feature: gene Location: 21047-21988 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21215-21764 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21215-21764 bp Feature: gene Location: 22079-22954 bp Feature: gene Location: 23158-24189 bp Feature: domain Description: HTH_23 Location: 23239-23377 bp Feature: domain Description: HTH_23 Location: 23 23 9-23 3 77 bp Feature: domain Description: HTH_33 Location: 23482-23629 bp Feature: domain Description: HTH_3 3 Location: 23 482-23 629 bp Feature: domain Description: DDE_3 Location: 23689-24106 bp Feature: domain Description: DDE_3 Location: 23 689-24106 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4756 (pfam15948), RVT-Retrons, HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358)