myRT

myRT report for GCA_003386935.1_ASM338693v1

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Seq: QTZU01000029.1 Klebsiella variicola strain BD_DM_167 NODE_29_length_51646_cov_12.741_pilon, whole genome shotgun sequence (51646 bp)
Overview 1 RT 1: 37403-41231 bp Neighborhood of RT #1 [37403, 41251] INT_Cre_C RVT-GII HHA Feature: gene Location: 37403-37720 bp Feature: gene Location: 37786-38922 bp Feature: domain Description: INT_Cre_C Location: 38209-38863 bp Feature: domain Description: INT_Cre_C Location: 38209-38863 bp Feature: gene Location: 39129-40496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39534-40065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39534-40065 bp Feature: gene Location: 40502-40669 bp Feature: gene Location: 40997-41251 bp Feature: domain Description: HHA Location: 41048-41231 bp Feature: domain Description: HHA Location: 41 048-41 231 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Cre_C (cd00799), RVT-GII, HHA (pfam05321)

Seq: QTZU01000037.1 Klebsiella variicola strain BD_DM_167 NODE_37_length_26245_cov_25.6078_pilon, whole genome shotgun sequence (26245 bp)
Overview 1 RT 1: 15039-22662 bp Neighborhood of RT #1 [15039, 22694] HsdS RMtype1_S_Eco2747I-TRD2-CR2_like RMtype1_S_Eco2747I-TRD2-CR2_like PRK04247 RVT-UG5 IncA Peptidase_M78 Feature: gene Location: 15039-16715 bp Feature: domain Description: HsdS Location: 15045-15378 bp Feature: domain Description: HsdS Location: 15045-15378 bp Feature: domain Description: RMtype1_S_Eco2747I-TRD2-CR2_like Location: 15612-15831 bp Feature: domain Description: RMtype1_S_Eco2 747I-TRD2 -CR2 _like Location: 15612 -15831 bp Feature: domain Description: RMtype1_S_Eco2747I-TRD2-CR2_like Location: 16131-16692 bp Feature: domain Description: RMtype1_S_Eco2 747I-TRD2 -CR2 _like Location: 16131-16692 bp Feature: gene Location: 16726-17826 bp Feature: domain Description: PRK04247 Location: 16789-17017 bp Feature: domain Description: PRK042 47 Location: 16789-17017 bp Feature: gene Location: 18006-21023 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 18504-18999 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 18504-18999 bp Feature: gene Location: 21442-22146 bp Feature: domain Description: IncA Location: 21763-22105 bp Feature: domain Description: IncA Location: 2 1763-2 2 105 bp Feature: gene Location: 22146-22694 bp Feature: domain Description: Peptidase_M78 Location: 22299-22662 bp Feature: domain Description: Peptidase_M78 Location: 2 2 2 99-2 2 662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdS (COG0732), RMtype1_S_Eco2747I-TRD2-CR2_like (cd17247), PRK04247 (endonuclease NucS), RVT-UG5, IncA, Peptidase_M78 (pfam06114)

Seq: QTZU01000042.1 Klebsiella variicola strain BD_DM_167 NODE_42_length_13465_cov_19.3307_pilon, whole genome shotgun sequence (13465 bp)
Overview 1 RT 1: 7150-12088 bp Neighborhood of RT #1 [7150, 12171] DUF4756 RVT-Retrons HTH_23 HTH_33 DDE_3 Feature: gene Location: 7150-7629 bp Feature: domain Description: DUF4756 Location: 7153-7624 bp Feature: domain Description: DUF4756 Location: 7153 -7624 bp Feature: gene Location: 7864-8742 bp Feature: gene Location: 9029-9970 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9197-9746 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9197-9746 bp Feature: gene Location: 10061-10936 bp Feature: gene Location: 11140-12171 bp Feature: domain Description: HTH_23 Location: 11221-11359 bp Feature: domain Description: HTH_23 Location: 11221-113 59 bp Feature: domain Description: HTH_33 Location: 11464-11611 bp Feature: domain Description: HTH_3 3 Location: 11464-11611 bp Feature: domain Description: DDE_3 Location: 11671-12088 bp Feature: domain Description: DDE_3 Location: 11671-12088 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4756 (pfam15948), RVT-Retrons, HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358)