myRT

myRT report for GCA_003387095.1_ASM338709v1

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Seq: QUMU01000005.1 Archangium gephyra strain DSM 2261 Ga0070489_105, whole genome shotgun sequence (933132 bp)
Overview 1 RT 1: 928148-932899 bp Neighborhood of RT #1 [928148, 933036] rpsO polynuc_phos RVT-GII GIIM Feature: gene Location: 928148-928420 bp Feature: domain Description: rpsO Location: 928157-928418 bp Feature: domain Description: rpsO Location: 9281 57-92841 8 bp Feature: gene Location: 928817-930988 bp Feature: domain Description: polynuc_phos Location: 928844-930893 bp Feature: domain Description: polynuc_phos Location: 928844-930893 bp Feature: gene Location: 931807-933036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931999-932614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931 999-93261 4 bp Feature: domain Description: GIIM Note: maturase Location: 932671-932899 bp Feature: domain Description: GIIM Note: maturase Location: 932671 -932899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsO (PRK05626), polynuc_phos (TIGR03591), RVT-GII, GIIM (pfam08388)

Seq: QUMU01000006.1 Archangium gephyra strain DSM 2261 Ga0070489_106, whole genome shotgun sequence (800329 bp)
Overview 1 RT 1: 592121-601878 bp Neighborhood of RT #1 [592121, 601952] CHD TOMM_kin_cyc NACHT COG1878 RVT-Retrons Imm52 Tox-REase-5 Feature: gene Location: 592121-596203 bp Feature: domain Description: CHD Location: 592241-592715 bp Feature: domain Description: CHD Location: 592 2 41-592 715 bp Feature: domain Description: TOMM_kin_cyc Location: 592976-594794 bp Feature: domain Description: TOMM_kin_cyc Location: 592 976-594794 bp Feature: domain Description: NACHT Location: 595457-595616 bp Feature: domain Description: NACHT Location: 595457-595616 bp Feature: gene Location: 596389-597045 bp Feature: domain Description: COG1878 Location: 596413-597025 bp Feature: domain Description: COG1878 Location: 596413-59702 5 bp Feature: gene Location: 597049-598473 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 597607-598234 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 597607-5982 34 bp Feature: gene Location: 598918-599268 bp Feature: domain Description: Imm52 Location: 598948-599242 bp Feature: domain Description: Imm52 Location: 598948-5992 42 bp Feature: gene Location: 599646-601952 bp Feature: domain Description: Tox-REase-5 Location: 601617-601878 bp Feature: domain Description: Tox-REase-5 Location: 601617-601878 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), TOMM_kin_cyc (TIGR03903), NACHT (pfam05729), COG1878 (Kynurenine formamidase ), RVT-Retrons, Imm52 (pfam15579), Tox-REase-5 (pfam15648)

Seq: QUMU01000008.1 Archangium gephyra strain DSM 2261 Ga0070489_108, whole genome shotgun sequence (699361 bp)
Overview 1 RT 1: 693466-698871 bp Neighborhood of RT #1 [693466, 699359] ATZ_TRZ_like Atl1 RVT-Retrons retinol-DH_like_SDR_c_like NosD Feature: gene Location: 693466-694827 bp Feature: domain Description: ATZ_TRZ_like Location: 693484-694711 bp Feature: domain Description: ATZ_TRZ_like Location: 693 484-694711 bp Feature: gene Location: 694941-695360 bp Feature: domain Description: Atl1 Location: 694971-695259 bp Feature: domain Description: Atl1 Location: 694971-695259 bp Feature: gene Location: 695475-696899 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 696078-696672 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 696078-696672 bp Feature: gene Location: 695010-697994 bp Feature: domain Description: retinol-DH_like_SDR_c_like Location: 697191-697953 bp Feature: domain Description: retinol-DH_like_SDR_c_like Location: 697191-697953 bp Feature: gene Location: 698130-699359 bp Feature: domain Description: NosD Location: 698439-698871 bp Feature: domain Description: NosD Location: 69843 9-698871 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ATZ_TRZ_like (cd01298), Atl1 (COG3695), retinol-DH_like_SDR_c_like (cd05327), RVT-Retrons, NosD (pfam05048)

Seq: QUMU01000010.1 Archangium gephyra strain DSM 2261 Ga0070489_110, whole genome shotgun sequence (549596 bp)
Overview 1 RT 1: 590-3747 bp Neighborhood of RT #1 [590, 3764] RVT-GII GIIM NlpD Feature: gene Location: 590-1819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 782-1397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 782-1397 bp Feature: domain Description: GIIM Note: maturase Location: 1454-1682 bp Feature: domain Description: GIIM Note: maturase Location: 14 54 -1682 bp Feature: gene Location: 2043-2741 bp Feature: gene Location: 2754-3764 bp Feature: domain Description: NlpD Location: 3114-3747 bp Feature: domain Description: NlpD Location: 3114 -374 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NlpD (COG0739), RVT-GII, GIIM (pfam08388)

Seq: QUMU01000011.1 Archangium gephyra strain DSM 2261 Ga0070489_111, whole genome shotgun sequence (508218 bp)
Overview 1 RT 1: 442773-447327 bp Neighborhood of RT #1 [442773, 447327] GAF RVT-Retrons SWIM Feature: gene Location: 442773-443360 bp Feature: domain Description: GAF Location: 442860-443277 bp Feature: domain Description: GAF Location: 442860-443277 bp Feature: gene Location: 443532-443795 bp Feature: gene Location: 443823-445421 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 444375-444990 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 444375 -444990 bp Feature: gene Location: 445701-447218 bp Feature: domain Description: SWIM Location: 447105-447186 bp Feature: domain Description: SWIM Location: 447105 -447186 bp Feature: gene Location: 447199-447327 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GAF (smart00065), RVT-Retrons, SWIM (pfam04434)

Seq: QUMU01000012.1 Archangium gephyra strain DSM 2261 Ga0070489_112, whole genome shotgun sequence (385565 bp)
Overview 1 RT 1: 590-6298 bp Neighborhood of RT #1 [590, 6486] RVT-GII GIIM PqqL PqqL Smc COG1579 Feature: gene Location: 590-1819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 782-1397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 782-1397 bp Feature: domain Description: GIIM Note: maturase Location: 1454-1682 bp Feature: domain Description: GIIM Note: maturase Location: 1454-16 82 bp Feature: gene Location: 1930-4533 bp Feature: domain Description: PqqL Location: 1939-3148 bp Feature: domain Description: PqqL Location: 1939-3148 bp Feature: domain Description: PqqL Location: 3298-4531 bp Feature: domain Description: PqqL Location: 3298-4531 bp Feature: gene Location: 4897-6486 bp Feature: domain Description: Smc Location: 5065-5866 bp Feature: domain Description: Smc Location: 506 5-586 6 bp Feature: domain Description: COG1579 Location: 5884-6298 bp Feature: domain Description: COG1579 Location: 5884-6 298 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PqqL (COG0612), Smc (COG1196), COG1579 (Predicted nucleic acid-binding protein, contains Zn-ribbon domain ), RVT-GII, GIIM (pfam08388)

Seq: QUMU01000017.1 Archangium gephyra strain DSM 2261 Ga0070489_117, whole genome shotgun sequence (267870 bp)
Overview 1 RT 1: 198642-205940 bp Neighborhood of RT #1 [198642, 205996] SWIM RVT-Retrons SUKH_6 Colicin-DNase Feature: gene Location: 198642-200492 bp Feature: gene Location: 200624-202102 bp Feature: domain Description: SWIM Location: 201854-201965 bp Feature: domain Description: SWIM Location: 201854-201965 bp Feature: gene Location: 202315-203583 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 202768-203380 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2027 68-203380 bp Feature: gene Location: 204045-204479 bp Feature: domain Description: SUKH_6 Location: 204108-204462 bp Feature: domain Description: SUKH_6 Location: 204108-204462 bp Feature: gene Location: 204476-205996 bp Feature: domain Description: Colicin-DNase Location: 205664-205940 bp Feature: domain Description: Colicin-DNase Location: 205664-205940 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SWIM (pfam04434), RVT-Retrons, SUKH_6 (pfam14568), Colicin-DNase (pfam12639)

Seq: QUMU01000020.1 Archangium gephyra strain DSM 2261 Ga0070489_120, whole genome shotgun sequence (194963 bp)
Overview 1 RT 1: 187206-194730 bp Neighborhood of RT #1 [187206, 194867] PilX_N PilY1 PilY1 RVT-GII GIIM Feature: gene Location: 187206-187718 bp Feature: domain Description: PilX_N Location: 187230-187377 bp Feature: domain Description: PilX_N Location: 18 7230-18 7377 bp Feature: gene Location: 187728-192989 bp Feature: domain Description: PilY1 Location: 189588-189762 bp Feature: domain Description: PilY1 Location: 18 958 8 -18 9762 bp Feature: domain Description: PilY1 Location: 190734-191652 bp Feature: domain Description: PilY1 Location: 190734-191652 bp Feature: gene Location: 193638-194867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193830-194445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1938 30-194445 bp Feature: domain Description: GIIM Note: maturase Location: 194502-194730 bp Feature: domain Description: GIIM Note: maturase Location: 194502-194730 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PilX_N (pfam14341), PilY1 (COG3419), RVT-GII, GIIM (pfam08388)