myRT

myRT report for GCA_003387275.1_ASM338727v1

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Seq: QUNA01000001.1 Paraburkholderia sp. BL6669N2 Ga0242538_11, whole genome shotgun sequence (4949841 bp)
Overview 1 RT 1: 1433718-1436555 bp 2 RT 2: 1483329-1487788 bp 3 RT 3: 1492482-1497145 bp 4 RT 4: 1632779-1637883 bp 5 RT 5: 3071816-3084480 bp 6 RT 6: 3571551-3578118 bp Neighborhood of RT #1 [1433718, 1436555] DDE_Tnp_IS66 COG3436 RVT-GII Neighborhood of RT #2 [1483329, 1487802] nifA RVT-GII PRK11161 Neighborhood of RT #3 [1492482, 1497162] HTH_Tnp_1 HTH_Tnp_1 COG3547 RVT_N RVT-GII GIIM Tra8 leuO Neighborhood of RT #4 [1632779, 1637883] DMSP_lyase IS285 RVT-GII GIIM Neighborhood of RT #5 [3071816, 3084578] SR_Res_par VirE_N DEXHc_RE RVT-UG2 COG4889 Arm-DNA-bind_3 INT_P4_C Neighborhood of RT #6 [3571551, 3578132] DUF4194 DUF3375 RVT-Retrons GyrI-like 2A0305 Feature: gene Location: 1433718-1433939 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1433724-1433916 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 433724-1 43391 6 bp Feature: gene Location: 1433951-1434310 bp Feature: domain Description: COG3436 Location: 1433963-1434254 bp Feature: domain Description: COG3436 Location: 1 433963-1 434254 bp Feature: gene Location: 1434446-1434766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1434503-1434692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 434503-1 434692 bp Feature: gene Location: 1435131-1435364 bp Feature: gene Location: 1436181-1436555 bp Feature: gene Location: 1483329-1483490 bp Feature: gene Location: 1483722-1485617 bp Feature: domain Description: nifA Location: 1483938-1485615 bp Feature: domain Description: nifA Location: 1 483938-1 48561 5 bp Feature: gene Location: 1485763-1486116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1485790-1485955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 485790-1 485955 bp Feature: gene Location: 1486443-1486676 bp Feature: gene Location: 1487014-1487802 bp Feature: domain Description: PRK11161 Location: 1487107-1487788 bp Feature: domain Description: PRK1 1 1 61 Location: 1 4871 07-1 487788 bp Feature: gene Location: 1492482-1492790 bp Feature: domain Description: HTH_Tnp_1 Location: 1492485-1492626 bp Feature: domain Description: HTH_Tnp_1 Location: 1 492485-1 492626 bp Feature: domain Description: HTH_Tnp_1 Location: 1492713-1492758 bp Feature: domain Description: HTH_Tnp_1 Location: 1 49271 3-1 492758 bp Feature: gene Location: 1493106-1494272 bp Feature: domain Description: COG3547 Location: 1493331-1494153 bp Feature: domain Description: COG3547 Location: 1 493331 -1 4941 53 bp Feature: gene Location: 1494263-1495609 bp Feature: domain Description: RVT_N Location: 1494266-1494410 bp Feature: domain Description: RVT_N Location: 1 494266-1 49441 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1494461-1495103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 494461 -1 4951 03 bp Feature: domain Description: GIIM Note: maturase Location: 1495154-1495388 bp Feature: domain Description: GIIM Note: maturase Location: 1 4951 54-1 495388 bp Feature: gene Location: 1495644-1496585 bp Feature: domain Description: Tra8 Location: 1495650-1496559 bp Feature: domain Description: Tra8 Location: 1 495650-1 496559 bp Feature: gene Location: 1496698-1497162 bp Feature: domain Description: leuO Location: 1496707-1497145 bp Feature: domain Description: leuO Location: 1 496707-1 4971 45 bp Feature: gene Location: 1632779-1633369 bp Feature: domain Description: DMSP_lyase Location: 1632866-1633349 bp Feature: domain Description: DMSP_lyase Location: 1 632866-1 633349 bp Feature: gene Location: 1633518-1634768 bp Feature: domain Description: IS285 Location: 1633602-1634757 bp Feature: domain Description: IS285 Location: 1 633602-1 634757 bp Feature: gene Location: 1635034-1636356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1635337-1635976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 635337-1 635976 bp Feature: domain Description: GIIM Note: maturase Location: 1636051-1636270 bp Feature: domain Description: GIIM Note: maturase Location: 1 636051 -1 636270 bp Feature: gene Location: 1637338-1637568 bp Feature: gene Location: 1637743-1637883 bp Feature: gene Location: 3071816-3072520 bp Feature: domain Description: SR_Res_par Location: 3071828-3072257 bp Feature: domain Description: SR_Res_par Location: 3071 828-3072257 bp Feature: gene Location: 3072923-3075820 bp Feature: domain Description: VirE_N Location: 3073094-3073469 bp Feature: domain Description: VirE_N Location: 3073094-3073469 bp Feature: domain Description: DEXHc_RE Location: 3073898-3074123 bp Feature: domain Description: DEXHc_RE Location: 3073898-30741 23 bp Feature: gene Location: 3077014-3078285 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 3077209-3077995 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 3077209-3077995 bp Feature: gene Location: 3078362-3083365 bp Feature: domain Description: COG4889 Location: 3078374-3083279 bp Feature: domain Description: COG4889 Location: 3078374-3083279 bp Feature: gene Location: 3083427-3084578 bp Feature: domain Description: Arm-DNA-bind_3 Location: 3083490-3083673 bp Feature: domain Description: Arm-DNA-bind_3 Location: 3083490-3083673 bp Feature: domain Description: INT_P4_C Location: 3084060-3084480 bp Feature: domain Description: INT_P4_C Location: 3084060-3084480 bp Feature: gene Location: 3571551-3572198 bp Feature: domain Description: DUF4194 Location: 3571614-3572124 bp Feature: domain Description: DUF41 94 Location: 3571 61 4-35721 24 bp Feature: gene Location: 3572203-3573702 bp Feature: domain Description: DUF3375 Location: 3572281-3573694 bp Feature: domain Description: DUF3375 Location: 3572281 -3573694 bp Feature: gene Location: 3573903-3575282 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3574368-3575007 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3574368-3575007 bp Feature: gene Location: 3575939-3576421 bp Feature: domain Description: GyrI-like Location: 3575954-3576416 bp Feature: domain Description: GyrI-like Location: 3575954-357641 6 bp Feature: gene Location: 3576675-3578132 bp Feature: domain Description: 2A0305 Location: 3576774-3578118 bp Feature: domain Description: 2A0305 Location: 3576774-35781 1 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), COG3436 (Transposase ), RVT-GII, nifA (TIGR01817), PRK11161 (fumarate/nitrate reduction transcriptional regulator Fnr), HTH_Tnp_1 (pfam01527), COG3547 (Transposase ), RVT_N (pfam13655), GIIM (pfam08388), Tra8 (COG2826)
leuO (PRK09508), DMSP_lyase (pfam16867), IS285 (COG3328), SR_Res_par (cd03767), VirE_N (pfam08800), DEXHc_RE (cd17926), RVT-UG2, COG4889 (Predicted helicase ), Arm-DNA-bind_3 (pfam13356), INT_P4_C (cd00801)
DUF4194 (pfam13835), DUF3375 (pfam11855), RVT-Retrons, GyrI-like (pfam06445), 2A0305 (TIGR00908)

Seq: QUNA01000002.1 Paraburkholderia sp. BL6669N2 Ga0242538_12, whole genome shotgun sequence (4735843 bp)
Overview 1 RT 1: 187270-192232 bp 2 RT 2: 306152-310769 bp 3 RT 3: 733034-740458 bp Neighborhood of RT #1 [187270, 192258] RVT-GII GIIM Phage_int_SAM_1 INT_RitA_C_like Neighborhood of RT #2 [306152, 310769] DDE_Tnp_1_6 Rve RVT-GII GIIM Rve Neighborhood of RT #3 [733034, 740458] RVT-Retrons Feature: gene Location: 187270-187431 bp Feature: gene Location: 187985-188311 bp Feature: gene Location: 188720-189370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 188723-188984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18872 3-188984 bp Feature: domain Description: GIIM Note: maturase Location: 189068-189272 bp Feature: domain Description: GIIM Note: maturase Location: 189068-1892 72 bp Feature: gene Location: 189493-190164 bp Feature: gene Location: 191011-192258 bp Feature: domain Description: Phage_int_SAM_1 Location: 191398-191614 bp Feature: domain Description: Phage_int_SAM_1 Location: 191398-191614 bp Feature: domain Description: INT_RitA_C_like Location: 191707-192232 bp Feature: domain Description: INT_RitA_C_like Location: 191707-192 2 32 bp Feature: gene Location: 306152-306823 bp Feature: domain Description: DDE_Tnp_1_6 Location: 306422-306767 bp Feature: domain Description: DDE_Tnp_1_6 Location: 30642 2 -306767 bp Feature: gene Location: 306852-307340 bp Feature: domain Description: Rve Location: 307080-307305 bp Feature: domain Description: Rve Location: 307080-307305 bp Feature: gene Location: 307966-309519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 308239-308977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3082 39-308977 bp Feature: domain Description: GIIM Note: maturase Location: 309067-309250 bp Feature: domain Description: GIIM Note: maturase Location: 309067-3092 50 bp Feature: gene Location: 309615-310025 bp Feature: domain Description: Rve Location: 309618-309975 bp Feature: domain Description: Rve Location: 309618-309975 bp Feature: gene Location: 310107-310769 bp Feature: gene Location: 733034-733297 bp Feature: gene Location: 733893-735179 bp Feature: gene Location: 735452-736525 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 735611-736256 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 735611-7362 56 bp Feature: gene Location: 736563-738482 bp Feature: gene Location: 738491-740458 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), DDE_Tnp_1_6 (pfam13751), Rve (COG3316), RVT-Retrons

Seq: QUNA01000003.1 Paraburkholderia sp. BL6669N2 Ga0242538_13, whole genome shotgun sequence (262952 bp)
Overview 1 RT 1: 184910-188403 bp Neighborhood of RT #1 [184910, 188435] Rve RVT-GII GIIM HTH_18 Feature: gene Location: 184910-185209 bp Feature: gene Location: 185290-185514 bp Feature: domain Description: Rve Location: 185299-185461 bp Feature: domain Description: Rve Location: 185299-185461 bp Feature: gene Location: 185798-187351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186071-186809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186071-186809 bp Feature: domain Description: GIIM Note: maturase Location: 186902-187082 bp Feature: domain Description: GIIM Note: maturase Location: 186902-187082 bp Feature: gene Location: 187746-188087 bp Feature: gene Location: 188142-188435 bp Feature: domain Description: HTH_18 Location: 188241-188403 bp Feature: domain Description: HTH_18 Location: 188241-188403 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII, GIIM (pfam08388), HTH_18 (pfam12833)