myRT

myRT report for GCA_003388255.1_ASM338825v1

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Seq: QLJR01000243.1 Escherichia coli strain LMR3154 NODE_200_length_2413_cov_33.8766, whole genome shotgun sequence (2413 bp)
Overview 1 RT 1: 120-2222 bp Neighborhood of RT #1 [120, 2222] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 120-1760 bp Feature: RT Description: RVT_N Location: 168-405 bp Feature: RT Description: RVT_N Location: 1 68-405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 456-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 456-1 098 bp Feature: domain Description: GIIM Note: maturase Location: 1149-1383 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 49-1 383 bp Feature: domain Description: HNHc Note: nucleases Location: 1593-1752 bp Feature: domain Description: HNHc Note: nucleases Location: 1 593-1 752 bp Feature: gene Location: 2040-2222 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: QLJR01000288.1 Escherichia coli strain LMR3154 NODE_201_length_2272_cov_29.6429, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QLJR01000035.1 Escherichia coli strain LMR3154 NODE_36_length_43893_cov_5.86908, whole genome shotgun sequence (43893 bp)
Overview 1 RT 1: 4566-11018 bp Neighborhood of RT #1 [4566, 11018] Nuc_deoxyrib_tr RVT-Retrons AAA_15 Feature: gene Location: 4566-4817 bp Feature: gene Location: 4847-5683 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 5336-5507 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 53 3 6-5507 bp Feature: gene Location: 6339-7439 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6522-7050 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6522-7050 bp Feature: gene Location: 7554-9830 bp Feature: domain Description: AAA_15 Location: 7587-8595 bp Feature: domain Description: AAA_15 Location: 7587-8595 bp Feature: gene Location: 10713-11018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, AAA_15 (pfam13175)