myRT

myRT report for GCA_003388345.1_ASM338834v1

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Seq: QLJM01000134.1 Escherichia coli strain RD29512 NODE_124_length_935_cov_198.139773, whole genome shotgun sequence (935 bp)
Overview 1 RT 1: 3-934 bp Neighborhood of RT #1 [3, 934] RVT-GII Feature: gene Location: 3-767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-732 bp Feature: gene Location: 791-934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QLJM01000031.1 Escherichia coli strain RD29512 NODE_31_length_50076_cov_55.681854, whole genome shotgun sequence (50076 bp)
Overview 1 RT 1: 44612-50054 bp Neighborhood of RT #1 [44612, 50074] PBP2_CrgA_like_5 RVT-UG8 RVT-UG3 PRK09678 Psu Feature: gene Location: 44612-45022 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 44684-44996 bp Feature: domain Description: PBP2 _CrgA_like_5 Location: 44684-44996 bp Feature: gene Location: 45186-45341 bp Feature: gene Location: 45564-47582 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 46137-46590 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 46137-46590 bp Feature: gene Location: 47573-48850 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 47861-48356 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 47861-48356 bp Feature: gene Location: 49245-49517 bp Feature: domain Description: PRK09678 Location: 49254-49419 bp Feature: domain Description: PRK09678 Location: 492 54-49419 bp Feature: gene Location: 49523-50074 bp Feature: domain Description: Psu Location: 49544-50054 bp Feature: domain Description: Psu Location: 49544-50054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_CrgA_like_5 (cd08474), RVT-UG8, RVT-UG3, PRK09678 (DNA-binding transcriptional regulator; Provisional), Psu (pfam07455)

Seq: QLJM01000120.1 Escherichia coli strain RD29512 NODE_75_length_14924_cov_59.223351, whole genome shotgun sequence (14924 bp)
Overview 1 RT 1: 9094-13225 bp Neighborhood of RT #1 [9094, 13230] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 9094-9384 bp Feature: gene Location: 9497-9703 bp Feature: gene Location: 10381-12282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10648-11479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10648-11479 bp Feature: domain Description: Intron_maturas2 Location: 11593-11851 bp Feature: domain Description: Intron_maturas2 Location: 11593 -11851 bp Feature: domain Description: HNHc Note: nucleases Location: 12025-12187 bp Feature: domain Description: HNHc Note: nucleases Location: 12025-12187 bp Feature: gene Location: 12477-12929 bp Feature: domain Description: PRK13732 Location: 12483-12927 bp Feature: domain Description: PRK13 73 2 Location: 12483 -12927 bp Feature: gene Location: 12997-13230 bp Feature: domain Description: DUF905 Location: 13027-13225 bp Feature: domain Description: DUF905 Location: 13 027-13 225 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: QLJM01000082.1 Escherichia coli strain RD29512 NODE_93_length_4205_cov_63.707952, whole genome shotgun sequence (4205 bp)
Overview 1 RT 1: 853-3980 bp Neighborhood of RT #1 [853, 3980] Arm-DNA-bind_3 RVT-Retrons Feature: gene Location: 853-1155 bp Feature: domain Description: Arm-DNA-bind_3 Location: 862-1114 bp Feature: domain Description: Arm-DNA-bind_3 Location: 862-1114 bp Feature: gene Location: 1339-1584 bp Feature: gene Location: 1610-2542 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1712-2306 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1712-2306 bp Feature: gene Location: 2544-3530 bp Feature: gene Location: 3831-3980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), RVT-Retrons