myRT

myRT report for GCA_003388355.1_ASM338835v1

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Seq: QLKD01000015.1 Escherichia coli strain LMR3150 NODE_15_length_126808_cov_8.66517, whole genome shotgun sequence (126808 bp)
Overview 1 RT 1: 57606-61547 bp Neighborhood of RT #1 [57606, 61547] RVT-Retrons Feature: gene Location: 57606-57845 bp Feature: gene Location: 58152-58328 bp Feature: gene Location: 58401-60173 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 58560-59178 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 58560-591 78 bp Feature: gene Location: 60195-60362 bp Feature: gene Location: 60408-61547 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: QLKD01000053.1 Escherichia coli strain LMR3150 NODE_57_length_12045_cov_9.98062, whole genome shotgun sequence (12045 bp)
Overview 1 RT 1: 7194-11067 bp Neighborhood of RT #1 [7194, 11438] SLATT_5 RVT-UG17 Caudo_TAP Macro_Appr_pase Feature: gene Location: 7194-7370 bp Feature: gene Location: 7778-8482 bp Feature: domain Description: SLATT_5 Location: 7940-8450 bp Feature: domain Description: SLATT_5 Location: 7940-8450 bp Feature: gene Location: 8460-9830 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8688-9294 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8688-92 94 bp Feature: gene Location: 9943-10527 bp Feature: domain Description: Caudo_TAP Location: 10159-10516 bp Feature: domain Description: Caudo_TAP Location: 10159-10516 bp Feature: gene Location: 10536-11438 bp Feature: domain Description: Macro_Appr_pase Location: 10554-11067 bp Feature: domain Description: Macro_Appr_pase Location: 10554-11067 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), Macro_Appr_pase (cd02900)

Seq: QLKD01000123.1 Escherichia coli strain LMR3150 NODE_70_length_7321_cov_15.3481, whole genome shotgun sequence (7321 bp)
Overview 1 RT 1: 1-3437 bp Neighborhood of RT #1 [1, 3490] PHA02517 RVT-GII GIIM PHA02517 autotrans_barl Feature: gene Location: 1-192 bp Feature: domain Description: PHA02517 Location: 4-127 bp Feature: domain Description: PHA02517 Location: 4-127 bp Feature: gene Location: 784-2307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057-1789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057-1789 bp Feature: domain Description: GIIM Note: maturase Location: 1864-2062 bp Feature: domain Description: GIIM Note: maturase Location: 1864-2062 bp Feature: gene Location: 2484-2870 bp Feature: domain Description: PHA02517 Location: 2487-2868 bp Feature: domain Description: PHA02517 Location: 2487-2868 bp Feature: gene Location: 2873-3490 bp Feature: domain Description: autotrans_barl Location: 2996-3437 bp Feature: domain Description: autotrans_barl Location: 2996-3 43 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), autotrans_barl (TIGR01414)

Seq: QLKD01000124.1 Escherichia coli strain LMR3150 NODE_74_length_5861_cov_14.3127, whole genome shotgun sequence (5861 bp)
Overview 1 RT 1: 362-4090 bp Neighborhood of RT #1 [362, 4095] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 362-568 bp Feature: gene Location: 902-1111 bp Feature: gene Location: 1246-3147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1513-2344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1513-234 4 bp Feature: domain Description: Intron_maturas2 Location: 2458-2716 bp Feature: domain Description: Intron_maturas2 Location: 24 58-2716 bp Feature: domain Description: HNHc Note: nucleases Location: 2890-3052 bp Feature: domain Description: HNHc Note: nucleases Location: 2890-3052 bp Feature: gene Location: 3342-3794 bp Feature: domain Description: PRK13732 Location: 3348-3792 bp Feature: domain Description: PRK13732 Location: 334 8-3792 bp Feature: gene Location: 3862-4095 bp Feature: domain Description: DUF905 Location: 3892-4090 bp Feature: domain Description: DUF905 Location: 3892-4 090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)