myRT

myRT report for GCA_003389005.1_ASM338900v1

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Seq: QLJP01000102.1 Escherichia coli strain B11C1 NODE_104_length_1039_cov_122.365854, whole genome shotgun sequence (1039 bp)
Overview 1 RT 1: 1-850 bp Neighborhood of RT #1 [1, 1038] RVT-GII GIIM Feature: gene Location: 1-1038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43-577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43-577 bp Feature: domain Description: GIIM Note: maturase Location: 652-850 bp Feature: domain Description: GIIM Note: maturase Location: 652-850 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QLJP01000014.1 Escherichia coli strain B11C1 NODE_14_length_93851_cov_57.625976, whole genome shotgun sequence (93851 bp)
Overview 1 RT 1: 853-4323 bp Neighborhood of RT #1 [853, 4430] Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 853-1155 bp Feature: domain Description: Arm-DNA-bind_3 Location: 862-1114 bp Feature: domain Description: Arm-DNA-bind_3 Location: 862 -1114 bp Feature: gene Location: 1339-1584 bp Feature: gene Location: 1610-2542 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1712-2306 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1712 -2 306 bp Feature: gene Location: 2544-3530 bp Feature: gene Location: 4158-4430 bp Feature: domain Description: PRK09678 Location: 4167-4323 bp Feature: domain Description: PRK09678 Location: 4167-432 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional), Arm-DNA-bind_3 (pfam13356)

Seq: QLJP01000028.1 Escherichia coli strain B11C1 NODE_28_length_53954_cov_47.882948, whole genome shotgun sequence (53954 bp)
Overview 1 RT 1: 9497-13225 bp Neighborhood of RT #1 [9497, 13230] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 9497-9703 bp Feature: gene Location: 10037-10246 bp Feature: gene Location: 10381-12282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10648-11479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10648-11479 bp Feature: domain Description: Intron_maturas2 Location: 11593-11851 bp Feature: domain Description: Intron_maturas2 Location: 11593 -11851 bp Feature: domain Description: HNHc Note: nucleases Location: 12025-12187 bp Feature: domain Description: HNHc Note: nucleases Location: 12025-12187 bp Feature: gene Location: 12477-12929 bp Feature: domain Description: PRK13732 Location: 12483-12927 bp Feature: domain Description: PRK13 73 2 Location: 12483 -12927 bp Feature: gene Location: 12997-13230 bp Feature: domain Description: DUF905 Location: 13027-13225 bp Feature: domain Description: DUF905 Location: 13 027-13 225 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)