myRT

myRT report for GCA_003389215.1_ASM338921v1

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Seq: QQVP01000021.1 Planctomycetes bacterium isolate MB_PLM_2 c_000000000103, whole genome shotgun sequence (59641 bp)
Overview 1 RT 1: 29221-33748 bp Neighborhood of RT #1 [29221, 33748] DDE_Tnp_1 RVT-GII GIIM integrase_gron Feature: gene Location: 29221-29424 bp Feature: gene Location: 29555-30535 bp Feature: domain Description: DDE_Tnp_1 Location: 29624-30227 bp Feature: domain Description: DDE_Tnp_1 Location: 29624-30227 bp Feature: gene Location: 30809-32410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31325-32015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 325-3201 5 bp Feature: domain Description: GIIM Note: maturase Location: 32096-32321 bp Feature: domain Description: GIIM Note: maturase Location: 32096-32321 bp Feature: gene Location: 32563-32805 bp Feature: domain Description: integrase_gron Location: 32623-32797 bp Feature: domain Description: integrase_gron Location: 32623-32797 bp Feature: gene Location: 32810-33748 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), integrase_gron (TIGR02249)

Seq: QQVP01000116.1 Planctomycetes bacterium isolate MB_PLM_2 c_000000000138, whole genome shotgun sequence (43036 bp)
Overview 1 RT 1: 1-5301 bp Neighborhood of RT #1 [1, 5387] RVT-GII GIIM DUF1501 PSCyt2 PSD1 Feature: gene Location: 1-183 bp Feature: gene Location: 523-1911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 865-1483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 865-1483 bp Feature: domain Description: GIIM Note: maturase Location: 1528-1738 bp Feature: domain Description: GIIM Note: maturase Location: 152 8-1738 bp Feature: gene Location: 2114-3415 bp Feature: domain Description: DUF1501 Location: 2288-3410 bp Feature: domain Description: DUF1501 Location: 2 2 88-3410 bp Feature: gene Location: 3450-5387 bp Feature: domain Description: PSCyt2 Location: 3828-4329 bp Feature: domain Description: PSCyt2 Location: 382 8-432 9 bp Feature: domain Description: PSD1 Location: 4551-5301 bp Feature: domain Description: PSD1 Location: 4551-5301 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF1501 (pfam07394), PSCyt2 (pfam07583), PSD1 (pfam07587)

Seq: QQVP01000073.1 Planctomycetes bacterium isolate MB_PLM_2 c_000000000201, whole genome shotgun sequence (28696 bp)
Overview 1 RT 1: 316-4678 bp Neighborhood of RT #1 [316, 4678] RVT-CRISPR-like Feature: gene Location: 316-627 bp Feature: gene Location: 479-2029 bp Feature: gene Location: 2050-3447 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2374-2995 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 23 74-2995 bp Feature: gene Location: 3498-4205 bp Feature: gene Location: 4532-4678 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: QQVP01000053.1 Planctomycetes bacterium isolate MB_PLM_2 c_000000000379, whole genome shotgun sequence (11527 bp)
Overview 1 RT 1: 6657-10871 bp Neighborhood of RT #1 [6657, 10871] RVT_N RVT-GII RVT-GII GIIM HNHc Transposase_mut Feature: gene Location: 6657-6887 bp Feature: gene Location: 7196-7399 bp Feature: gene Location: 7532-9499 bp Feature: domain Description: RVT_N Location: 7589-7826 bp Feature: domain Description: RVT_N Location: 7589-7826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7883-8339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7883-8339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8573-8768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8573-8768 bp Feature: domain Description: GIIM Note: maturase Location: 8831-9053 bp Feature: domain Description: GIIM Note: maturase Location: 8831-9053 bp Feature: domain Description: HNHc Note: nucleases Location: 9266-9416 bp Feature: domain Description: HNHc Note: nucleases Location: 9266-94 16 bp Feature: gene Location: 9654-10277 bp Feature: domain Description: Transposase_mut Location: 9738-10116 bp Feature: domain Description: Transposase_mut Location: 9738-10116 bp Feature: gene Location: 10344-10871 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Transposase_mut (pfam00872)