myRT

myRT report for GCA_003391015.1_ASM339101v1

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Seq: QUAA01000046.1 Klebsiella variicola strain BD_DM_32 NODE_46_length_23380_cov_16.238_pilon, whole genome shotgun sequence (23380 bp)
Overview 1 RT 1: 687-8319 bp Neighborhood of RT #1 [687, 8342] Peptidase_M78 IncA RVT-UG5 PRK04247 HsdS RMtype1_S_Eco2747I-TRD2-CR2_like RMtype1_S_Eco2747I-TRD2-CR2_like Feature: gene Location: 687-1235 bp Feature: domain Description: Peptidase_M78 Location: 840-1203 bp Feature: domain Description: Peptidase_M78 Location: 840-1 203 bp Feature: gene Location: 1235-1939 bp Feature: domain Description: IncA Location: 1556-1898 bp Feature: domain Description: IncA Location: 1 556-1 898 bp Feature: gene Location: 2358-5375 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2856-3351 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2856-3351 bp Feature: gene Location: 5555-6655 bp Feature: domain Description: PRK04247 Location: 5618-5846 bp Feature: domain Description: PRK04247 Location: 561 8-5846 bp Feature: gene Location: 6666-8342 bp Feature: domain Description: HsdS Location: 6672-7005 bp Feature: domain Description: HsdS Location: 6672-7005 bp Feature: domain Description: RMtype1_S_Eco2747I-TRD2-CR2_like Location: 7239-7458 bp Feature: domain Description: RMtype1 _S_Eco2747I-TRD2-CR2_like Location: 7239-7458 bp Feature: domain Description: RMtype1_S_Eco2747I-TRD2-CR2_like Location: 7758-8319 bp Feature: domain Description: RMtype1 _S_Eco2747I-TRD2-CR2_like Location: 7758-831 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_M78 (pfam06114), IncA, RVT-UG5, PRK04247 (endonuclease NucS), HsdS (COG0732), RMtype1_S_Eco2747I-TRD2-CR2_like (cd17247)

Seq: QUAA01000056.1 Klebsiella variicola strain BD_DM_32 NODE_56_length_11483_cov_15.4002_pilon, whole genome shotgun sequence (11483 bp)
Overview 1 RT 1: 9240-11013 bp Neighborhood of RT #1 [9240, 11273] RVT-Retrons Feature: gene Location: 9240-9374 bp Feature: gene Location: 9386-10336 bp Feature: gene Location: 10494-11273 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10500-11013 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10500-11013 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: QUAA01000068.1 Klebsiella variicola strain BD_DM_32 NODE_68_length_5696_cov_9.79763_pilon, whole genome shotgun sequence (5696 bp)
Overview 1 RT 1: 45-4269 bp Neighborhood of RT #1 [45, 4352] RVT-Retrons HTH_23 HTH_33 DDE_3 Feature: gene Location: 45-923 bp Feature: gene Location: 1210-2151 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1378-1927 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13 78-1927 bp Feature: gene Location: 2242-3117 bp Feature: gene Location: 3321-4352 bp Feature: domain Description: HTH_23 Location: 3402-3540 bp Feature: domain Description: HTH_23 Location: 3 402-3 540 bp Feature: domain Description: HTH_33 Location: 3645-3792 bp Feature: domain Description: HTH_3 3 Location: 3 645-3 792 bp Feature: domain Description: DDE_3 Location: 3852-4269 bp Feature: domain Description: DDE_3 Location: 3 852-4269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358)

Seq: QUAA01000096.1 Klebsiella variicola strain BD_DM_32 NODE_96_length_1787_cov_30.1139_pilon, whole genome shotgun sequence (1787 bp)
Overview 1 RT 1: 2-1784 bp Neighborhood of RT #1 [2, 1784] RVT-GII Feature: gene Location: 2-145 bp Feature: gene Location: 172-1398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 427-1117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 27-1117 bp Feature: gene Location: 1545-1784 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII