myRT

myRT report for GCA_003397505.1_ASM339750v1

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Seq: QFTG01000019.1 Pseudomonas aeruginosa strain AUH-PA43 scaffold_18, whole genome shotgun sequence (102421 bp)
Overview 1 RT 1: 43938-49061 bp Neighborhood of RT #1 [43938, 49072] PRK13360 COG3450 RVT_N RVT-GII YkfC HNHc rpmG RpmB Feature: gene Location: 43938-45266 bp Feature: domain Description: PRK13360 Location: 43944-45258 bp Feature: domain Description: PRK1 3360 Location: 43944-45258 bp Feature: gene Location: 45332-45694 bp Feature: domain Description: COG3450 Location: 45335-45680 bp Feature: domain Description: COG3450 Location: 45335-45680 bp Feature: gene Location: 45901-47607 bp Feature: RT Description: RVT_N Location: 45958-46198 bp Feature: RT Description: RVT_N Location: 45958-461 98 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46246-46882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46246-46882 bp Feature: domain Description: YkfC Location: 47104-47248 bp Feature: domain Description: YkfC Location: 471 04-47248 bp Feature: domain Description: HNHc Note: nucleases Location: 47377-47551 bp Feature: domain Description: HNHc Note: nucleases Location: 47377-47551 bp Feature: gene Location: 48669-48824 bp Feature: domain Description: rpmG Location: 48672-48816 bp Feature: domain Description: rpmG Location: 48672-4881 6 bp Feature: gene Location: 48836-49072 bp Feature: domain Description: RpmB Location: 48839-49061 bp Feature: domain Description: RpmB Location: 48839-49061 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13360 (omega amino acid--pyruvate transaminase; Provisional), COG3450 (Predicted enzyme of the cupin superfamily ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), rpmG (PRK00595), RpmB (COG0227)

Seq: QFTG01000042.1 Pseudomonas aeruginosa strain AUH-PA43 scaffold_41, whole genome shotgun sequence (38002 bp)
Overview 1 RT 1: 1-3051 bp Neighborhood of RT #1 [1, 3051] RVT-GII GIIM Feature: gene Location: 1-336 bp Feature: gene Location: 872-2140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1085-1742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1085-1742 bp Feature: domain Description: GIIM Note: maturase Location: 1820-2042 bp Feature: domain Description: GIIM Note: maturase Location: 182 0-2 042 bp Feature: gene Location: 2290-2688 bp Feature: gene Location: 2872-3051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QFTG01000006.1 Pseudomonas aeruginosa strain AUH-PA43 scaffold_5, whole genome shotgun sequence (357880 bp)
Overview 1 RT 1: 61556-70426 bp 2 RT 2: 86691-96990 bp Neighborhood of RT #1 [61556, 70434] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [86691, 97001] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 61556-62230 bp Feature: domain Description: NTP_transferase_like_1 Location: 61562-62201 bp Feature: domain Description: NTP_transferase_like_1 Location: 61562-62201 bp Feature: gene Location: 62227-63243 bp Feature: domain Description: COG3178 Location: 62230-63229 bp Feature: domain Description: COG3 178 Location: 6223 0-63 229 bp Feature: gene Location: 64515-66227 bp Feature: RT Description: RVT_N Location: 64572-64815 bp Feature: RT Description: RVT_N Location: 64572-64815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64860-65496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64860-65496 bp Feature: domain Description: YkfC Location: 65706-65856 bp Feature: domain Description: YkfC Location: 65706-65856 bp Feature: domain Description: HNH Note: nucleases Location: 66033-66171 bp Feature: domain Description: HNH Note: nucleases Location: 6603 3 -66171 bp Feature: gene Location: 66360-69161 bp Feature: domain Description: LptD Location: 66555-69147 bp Feature: domain Description: LptD Location: 66555-69147 bp Feature: gene Location: 69220-70434 bp Feature: domain Description: PRK10770 Location: 69232-70426 bp Feature: domain Description: PRK10770 Location: 6923 2-70426 bp Feature: gene Location: 86691-88544 bp Feature: domain Description: PRK05658 Location: 86703-88542 bp Feature: domain Description: PRK05658 Location: 86703 -88542 bp Feature: gene Location: 88651-92388 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 88759-89416 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 88759-89416 bp Feature: domain Description: PRK09776 Location: 89629-90100 bp Feature: domain Description: PRK09776 Location: 89629-90100 bp Feature: domain Description: PAS Location: 90145-90682 bp Feature: domain Description: PAS Location: 90145-90682 bp Feature: domain Description: PRK10060 Location: 90691-92338 bp Feature: domain Description: PRK10060 Location: 90691-923 3 8 bp Feature: gene Location: 93469-95154 bp Feature: RT Description: RVT_N Location: 93526-93766 bp Feature: RT Description: RVT_N Location: 93 526-93 766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93814-94450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 814-94450 bp Feature: domain Description: GIIM Note: maturase Location: 94504-94735 bp Feature: domain Description: GIIM Note: maturase Location: 94504-9473 5 bp Feature: domain Description: HNH Note: nucleases Location: 94987-95125 bp Feature: domain Description: HNH Note: nucleases Location: 94987-95125 bp Feature: gene Location: 95457-95618 bp Feature: gene Location: 95880-97001 bp Feature: domain Description: COG3177 Location: 95898-96990 bp Feature: domain Description: COG3 177 Location: 95898-96990 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )