myRT

myRT report for GCA_003400445.1_ASM340044v1

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Seq: PXJQ01000123.1 Escherichia coli strain CRE87 NODE_123_length_2942_cov_10.5248, whole genome shotgun sequence (2942 bp)
Overview 1 RT 1: 93-2222 bp Neighborhood of RT #1 [93, 2222] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 93-1760 bp Feature: domain Description: RVT_N Location: 141-378 bp Feature: domain Description: RVT_N Location: 1 41 -378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1 071 bp Feature: domain Description: GIIM Note: maturase Location: 1122-1356 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 22-1 356 bp Feature: domain Description: HNHc Note: nucleases Location: 1566-1725 bp Feature: domain Description: HNHc Note: nucleases Location: 1 566-1 725 bp Feature: gene Location: 1797-1943 bp Feature: gene Location: 2040-2222 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: PXJQ01000139.1 Escherichia coli strain CRE87 NODE_139_length_2103_cov_6.05176, whole genome shotgun sequence (2103 bp)
Overview 1 RT 1: 2-2102 bp Neighborhood of RT #1 [2, 2102] RVT-GII Feature: gene Location: 2-1375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 269-1100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 69-1100 bp Feature: gene Location: 1977-2102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PXJQ01000028.1 Escherichia coli strain CRE87 NODE_28_length_55242_cov_77.2003, whole genome shotgun sequence (55242 bp)
Overview 1 RT 1: 20069-26100 bp Neighborhood of RT #1 [20069, 26100] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 20069-20989 bp Feature: domain Description: AbiEii Location: 20111-20852 bp Feature: domain Description: AbiEii Location: 20111-20852 bp Feature: gene Location: 20976-21779 bp Feature: domain Description: AbiEi_3_N Location: 21009-21270 bp Feature: domain Description: AbiEi_3 _N Location: 21009-21270 bp Feature: domain Description: AbiEi_3 Location: 21282-21738 bp Feature: domain Description: AbiEi_3 Location: 21282-2173 8 bp Feature: gene Location: 22074-25283 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 22602-23091 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 22602-23 091 bp Feature: domain Description: nitrilase Location: 24597-25194 bp Feature: domain Description: nitrilase Location: 24597-25194 bp Feature: gene Location: 25444-25584 bp Feature: domain Description: Phage_ASH Location: 25471-25564 bp Feature: domain Description: Phage_ASH Location: 25471-25564 bp Feature: gene Location: 25630-26100 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: PXJQ01000510.1 Escherichia coli strain CRE87 NODE_510_length_304_cov_1.64257, whole genome shotgun sequence (304 bp)
Overview 1 RT 1: 1-304 bp Neighborhood of RT #1 [1, 303] RVT-GII Feature: gene Location: 1-303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43-304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 3-304 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PXJQ01000084.1 Escherichia coli strain CRE87 NODE_84_length_11380_cov_7.45307, whole genome shotgun sequence (11380 bp)
Overview 1 RT 1: 110-3487 bp Neighborhood of RT #1 [110, 3492] PRK09413 RVT-GII GIIM PinE Feature: gene Location: 110-307 bp Feature: domain Description: PRK09413 Location: 113-275 bp Feature: domain Description: PRK09413 Location: 113-275 bp Feature: gene Location: 783-2135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1104-1722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1104-1722 bp Feature: domain Description: GIIM Note: maturase Location: 1770-2001 bp Feature: domain Description: GIIM Note: maturase Location: 1770-2001 bp Feature: gene Location: 2344-2745 bp Feature: gene Location: 2845-3492 bp Feature: domain Description: PinE Location: 2938-3487 bp Feature: domain Description: PinE Location: 2938-3487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09413 (IS2 repressor TnpA; Reviewed), RVT-GII, GIIM (pfam08388), PinE (COG1961)