myRT

myRT report for GCA_003401005.1_ASM340100v1

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Seq: PXLI01000007.1 Escherichia coli strain CRE14 NODE_7_length_185562_cov_69.9859, whole genome shotgun sequence (185562 bp)
Overview 1 RT 1: 1007-6065 bp Neighborhood of RT #1 [1007, 6067] COG4733 Caudo_TAP RVT-UG17 SLATT_5 prfC Feature: gene Location: 1007-1546 bp Feature: domain Description: COG4733 Location: 1010-1517 bp Feature: domain Description: COG4733 Location: 1 01 0-1 51 7 bp Feature: gene Location: 1609-1785 bp Feature: domain Description: Caudo_TAP Location: 1612-1774 bp Feature: domain Description: Caudo_TAP Location: 1 61 2-1 774 bp Feature: gene Location: 1898-3268 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2126-2732 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 21 26-2732 bp Feature: gene Location: 3246-3950 bp Feature: domain Description: SLATT_5 Location: 3408-3918 bp Feature: domain Description: SLATT_5 Location: 3408-391 8 bp Feature: gene Location: 4481-6067 bp Feature: domain Description: prfC Location: 4499-6065 bp Feature: domain Description: prfC Location: 4499-6065 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4733 (Phage-related protein, tail component ), Caudo_TAP (pfam02413), RVT-UG17, SLATT_5 (pfam18160), prfC (TIGR00503)

Seq: PXLI01000024.1 Escherichia coli strain CRE14 NODE_24_length_78743_cov_75.2738, whole genome shotgun sequence (78743 bp)
Overview 1 RT 1: 49267-53150 bp Neighborhood of RT #1 [49267, 53155] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 49267-49725 bp Feature: domain Description: dut Location: 49273-49720 bp Feature: domain Description: dut Location: 492 73-4972 0 bp Feature: gene Location: 49832-50428 bp Feature: domain Description: slmA Location: 49838-50414 bp Feature: domain Description: slmA Location: 49838-50414 bp Feature: gene Location: 50474-51433 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50609-51158 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50609-51158 bp Feature: gene Location: 51731-52387 bp Feature: domain Description: pyrE Location: 51749-52382 bp Feature: domain Description: pyrE Location: 51749-52 382 bp Feature: gene Location: 52439-53155 bp Feature: domain Description: rph Location: 52442-53150 bp Feature: domain Description: rph Location: 52 442 -53150 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: PXLI01000080.1 Escherichia coli strain CRE14 NODE_80_length_2132_cov_2.8209, whole genome shotgun sequence (2132 bp)
Overview 1 RT 1: 1-1629 bp Neighborhood of RT #1 [1, 2021] RVT-GII Feature: gene Location: 1-138 bp Feature: gene Location: 534-2021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 939-1629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 9-1629 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PXLI01000881.1 Escherichia coli strain CRE14 NODE_881_length_433_cov_1.47619, whole genome shotgun sequence (433 bp)
Overview 1 RT 1: 2-431 bp Neighborhood of RT #1 [2, 430] RVT-GII GIIM Feature: gene Location: 2-430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14-185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 -185 bp Feature: domain Description: GIIM Note: maturase Location: 236-431 bp Feature: domain Description: GIIM Note: maturase Location: 236-4 31 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PXLI01001803.1 Escherichia coli strain CRE14 NODE_1803_length_331_cov_2.20652, whole genome shotgun sequence (331 bp)
Overview 1 RT 1: 96-309 bp Neighborhood of RT #1 [96, 329] RVT-GII Feature: gene Location: 96-329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99-309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99-309 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PXLI01003703.1 Escherichia coli strain CRE14 NODE_3704_length_249_cov_1.41753, whole genome shotgun sequence (249 bp)
Overview 1 RT 1: 1-247 bp Neighborhood of RT #1 [1, 246] RVT-GII Feature: gene Location: 1-246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 175-247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 175-247 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PXLI01004743.1 Escherichia coli strain CRE14 NODE_4745_length_226_cov_1.97661, whole genome shotgun sequence (226 bp)
Overview 1 RT 1: 2-221 bp Neighborhood of RT #1 [2, 223] RVT-GII Feature: gene Location: 2-223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146-221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146-221 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII