myRT

myRT report for GCA_003401175.1_ASM340117v1

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Seq: PXKA01000026.1 Enterobacter kobei strain CRE71 NODE_26_length_66072_cov_68.4982, whole genome shotgun sequence (66072 bp)
Overview 1 RT 1: 34154-40314 bp Neighborhood of RT #1 [34154, 40334] PRK09692 RVT-Retrons COG3515 VasL Feature: gene Location: 34154-35263 bp Feature: domain Description: PRK09692 Location: 34163-35255 bp Feature: domain Description: PRK09692 Location: 341 63-35255 bp Feature: gene Location: 35266-36306 bp Feature: gene Location: 36306-37490 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36456-37035 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36456-37035 bp Feature: gene Location: 37796-37981 bp Feature: gene Location: 39015-40334 bp Feature: domain Description: COG3515 Location: 39027-39555 bp Feature: domain Description: COG351 5 Location: 39027-39555 bp Feature: domain Description: VasL Location: 39882-40314 bp Feature: domain Description: VasL Location: 39882-4031 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-Retrons, COG3515 (Predicted component of the type VI protein secretion system ), VasL (pfam12486)

Seq: PXKA01000047.1 Enterobacter kobei strain CRE71 NODE_47_length_11483_cov_65.8135, whole genome shotgun sequence (11483 bp)
Overview 1 RT 1: 4140-9446 bp Neighborhood of RT #1 [4140, 9454] StbA PRK10276 RVT_N RVT-GII GIIM HNHc umuC Feature: gene Location: 4140-5114 bp Feature: domain Description: StbA Location: 4149-5091 bp Feature: domain Description: StbA Location: 4149-5091 bp Feature: gene Location: 5344-5478 bp Feature: domain Description: PRK10276 Location: 5395-5458 bp Feature: domain Description: PRK102 76 Location: 5395-5458 bp Feature: gene Location: 6068-7783 bp Feature: RT Description: RVT_N Location: 6122-6365 bp Feature: RT Description: RVT_N Location: 612 2 -6365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6410-7061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6410-7061 bp Feature: domain Description: GIIM Note: maturase Location: 7115-7346 bp Feature: domain Description: GIIM Note: maturase Location: 7115-7346 bp Feature: domain Description: HNHc Note: nucleases Location: 7580-7736 bp Feature: domain Description: HNHc Note: nucleases Location: 7580-7736 bp Feature: gene Location: 7857-8162 bp Feature: gene Location: 8183-9454 bp Feature: domain Description: umuC Location: 8186-9446 bp Feature: domain Description: umuC Location: 8186-9446 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT StbA (pfam06406), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), umuC (PRK03609)