myRT

myRT report for GCA_003401235.1_ASM340123v1

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Seq: PXKG01000022.1 Escherichia coli strain CRE45 NODE_22_length_75183_cov_81.8195, whole genome shotgun sequence (75183 bp)
Overview 1 RT 1: 49267-53150 bp Neighborhood of RT #1 [49267, 53155] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 49267-49725 bp Feature: domain Description: dut Location: 49273-49720 bp Feature: domain Description: dut Location: 49273-49720 bp Feature: gene Location: 49832-50428 bp Feature: domain Description: slmA Location: 49838-50414 bp Feature: domain Description: slmA Location: 49838-5041 4 bp Feature: gene Location: 50474-51433 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50609-51158 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50609-51 1 58 bp Feature: gene Location: 51731-52387 bp Feature: domain Description: pyrE Location: 51749-52382 bp Feature: domain Description: pyrE Location: 51 749-52382 bp Feature: gene Location: 52439-53155 bp Feature: domain Description: rph Location: 52442-53150 bp Feature: domain Description: rph Location: 52442-531 50 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: PXKG01000416.1 Escherichia coli strain CRE45 NODE_416_length_285_cov_0.991304, whole genome shotgun sequence (285 bp)
Overview 1 RT 1: 3-282 bp Neighborhood of RT #1 [3, 284] RVT-GII GIIM Feature: gene Location: 3-284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-144 bp Feature: domain Description: GIIM Note: maturase Location: 198-282 bp Feature: domain Description: GIIM Note: maturase Location: 198-2 82 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PXKG01000057.1 Escherichia coli strain CRE45 NODE_57_length_7628_cov_22.0327, whole genome shotgun sequence (7628 bp)
Overview 1 RT 1: 4035-7627 bp Neighborhood of RT #1 [4035, 7627] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 4035-4268 bp Feature: domain Description: DUF905 Location: 4065-4263 bp Feature: domain Description: DUF905 Location: 4065-4263 bp Feature: gene Location: 4331-4783 bp Feature: domain Description: PRK13732 Location: 4337-4781 bp Feature: domain Description: PRK13 73 2 Location: 43 3 7-4781 bp Feature: gene Location: 4978-6879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5245-6076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5245-6076 bp Feature: domain Description: Intron_maturas2 Location: 6190-6448 bp Feature: domain Description: Intron_maturas2 Location: 6190-6448 bp Feature: domain Description: HNHc Note: nucleases Location: 6622-6784 bp Feature: domain Description: HNHc Note: nucleases Location: 6622-6784 bp Feature: gene Location: 7442-7627 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: PXKG01000068.1 Escherichia coli strain CRE45 NODE_68_length_2344_cov_179.467, whole genome shotgun sequence (2344 bp)
Overview 1 RT 1: 2-2227 bp Neighborhood of RT #1 [2, 2262] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2-145 bp Feature: gene Location: 595-2262 bp Feature: RT Description: RVT_N Location: 643-880 bp Feature: RT Description: RVT_N Location: 64 3-880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1573 bp Feature: domain Description: GIIM Note: maturase Location: 1624-1858 bp Feature: domain Description: GIIM Note: maturase Location: 1624 -1858 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)