myRT

myRT report for GCA_003401245.1_ASM340124v1

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Seq: PXKD01000022.1 Enterobacter kobei strain CRE54 NODE_22_length_89105_cov_57.0033, whole genome shotgun sequence (89105 bp)
Overview 1 RT 1: 34154-40314 bp Neighborhood of RT #1 [34154, 40334] PRK09692 RVT-Retrons COG3515 VasL Feature: gene Location: 34154-35263 bp Feature: domain Description: PRK09692 Location: 34163-35255 bp Feature: domain Description: PRK09692 Location: 341 63-35255 bp Feature: gene Location: 35266-36306 bp Feature: gene Location: 36306-37490 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36456-37035 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36456-37035 bp Feature: gene Location: 37796-37981 bp Feature: gene Location: 39015-40334 bp Feature: domain Description: COG3515 Location: 39027-39555 bp Feature: domain Description: COG351 5 Location: 39027-39555 bp Feature: domain Description: VasL Location: 39882-40314 bp Feature: domain Description: VasL Location: 39882-4031 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-Retrons, COG3515 (Predicted component of the type VI protein secretion system ), VasL (pfam12486)

Seq: PXKD01000044.1 Enterobacter kobei strain CRE54 NODE_44_length_11466_cov_78.7523, whole genome shotgun sequence (11466 bp)
Overview 1 RT 1: 4123-9429 bp Neighborhood of RT #1 [4123, 9437] StbA PRK10276 RVT_N RVT-GII GIIM HNHc umuC Feature: gene Location: 4123-5097 bp Feature: domain Description: StbA Location: 4132-5074 bp Feature: domain Description: StbA Location: 4132 -5074 bp Feature: gene Location: 5327-5461 bp Feature: domain Description: PRK10276 Location: 5378-5441 bp Feature: domain Description: PRK102 76 Location: 5378-5441 bp Feature: gene Location: 6051-7766 bp Feature: RT Description: RVT_N Location: 6105-6348 bp Feature: RT Description: RVT_N Location: 6105-6348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6393-7044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6393-7044 bp Feature: domain Description: GIIM Note: maturase Location: 7098-7329 bp Feature: domain Description: GIIM Note: maturase Location: 7098-732 9 bp Feature: domain Description: HNHc Note: nucleases Location: 7563-7719 bp Feature: domain Description: HNHc Note: nucleases Location: 7563-7719 bp Feature: gene Location: 7840-8145 bp Feature: gene Location: 8166-9437 bp Feature: domain Description: umuC Location: 8169-9429 bp Feature: domain Description: umuC Location: 8169-942 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT StbA (pfam06406), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), umuC (PRK03609)