myRT

myRT report for GCA_003402535.1_ASM340253v1

Download annotations/find similar RTs

Seq: BGPQ01000001.1 Cupriavidus sp. P-10 DNA, contig1, whole genome shotgun sequence (1196340 bp)
Overview 1 RT 1: 161473-167027 bp 2 RT 2: 329902-335359 bp Neighborhood of RT #1 [161473, 167044] PspE GRX_bact RVT-GII GIIM HNHc PRK05751 gpsA Neighborhood of RT #2 [329902, 335370] rpsI CcmA RVT-GII GIIM HNHc PRK13623 PhyH Feature: gene Location: 161473-161886 bp Feature: domain Description: PspE Location: 161584-161884 bp Feature: domain Description: PspE Location: 1 61 584-1 61 884 bp Feature: gene Location: 162052-162309 bp Feature: domain Description: GRX_bact Location: 162064-162301 bp Feature: domain Description: GRX_bact Location: 1 62064-1 62301 bp Feature: gene Location: 163929-165227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163932-164520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 63932-1 64520 bp Feature: domain Description: GIIM Note: maturase Location: 164574-164805 bp Feature: domain Description: GIIM Note: maturase Location: 1 64574-1 64805 bp Feature: domain Description: HNHc Note: nucleases Location: 165027-165189 bp Feature: domain Description: HNHc Note: nucleases Location: 1 65027-1 651 89 bp Feature: gene Location: 165412-165930 bp Feature: domain Description: PRK05751 Location: 165415-165874 bp Feature: domain Description: PRK05751 Location: 1 6541 5-1 65874 bp Feature: gene Location: 166028-167044 bp Feature: domain Description: gpsA Location: 166031-167027 bp Feature: domain Description: gpsA Location: 1 66031 -1 67027 bp Feature: gene Location: 329902-330294 bp Feature: domain Description: rpsI Location: 329914-330292 bp Feature: domain Description: rpsI Location: 32991 4-330292 bp Feature: gene Location: 330549-331046 bp Feature: domain Description: CcmA Location: 330561-330912 bp Feature: domain Description: CcmA Location: 330561 -33091 2 bp Feature: gene Location: 332681-333976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 332684-333272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 332684-333272 bp Feature: domain Description: GIIM Note: maturase Location: 333323-333557 bp Feature: domain Description: GIIM Note: maturase Location: 333323-333557 bp Feature: domain Description: HNHc Note: nucleases Location: 333776-333941 bp Feature: domain Description: HNHc Note: nucleases Location: 333776-333941 bp Feature: gene Location: 334089-334457 bp Feature: domain Description: PRK13623 Location: 334122-334455 bp Feature: domain Description: PRK1 3623 Location: 3341 22-334455 bp Feature: gene Location: 334516-335370 bp Feature: domain Description: PhyH Location: 334720-335359 bp Feature: domain Description: PhyH Location: 334720-335359 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PspE (COG0607), GRX_bact (TIGR02181), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05751 (preprotein translocase subunit SecB; Validated), gpsA (PRK00094), rpsI (PRK00132), CcmA (COG4133), PRK13623 (iron-sulfur cluster insertion protein ErpA; Provisional)
PhyH (pfam05721)

Seq: BGPQ01000002.1 Cupriavidus sp. P-10 DNA, contig2, whole genome shotgun sequence (467263 bp)
Overview 1 RT 1: 177930-183517 bp Neighborhood of RT #1 [177930, 183525] ispH SlpA RVT-GII GIIM HNHc PRK00024 RpmB Feature: gene Location: 177930-178895 bp Feature: domain Description: ispH Location: 177963-178848 bp Feature: domain Description: ispH Location: 177963-178848 bp Feature: gene Location: 178933-179421 bp Feature: domain Description: SlpA Location: 178993-179416 bp Feature: domain Description: SlpA Location: 178993-179416 bp Feature: gene Location: 179532-180833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 179535-180123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 179535-18012 3 bp Feature: domain Description: GIIM Note: maturase Location: 180174-180408 bp Feature: domain Description: GIIM Note: maturase Location: 180174-180408 bp Feature: domain Description: HNHc Note: nucleases Location: 180630-180792 bp Feature: domain Description: HNHc Note: nucleases Location: 180630-180792 bp Feature: gene Location: 182414-183100 bp Feature: domain Description: PRK00024 Location: 182417-183077 bp Feature: domain Description: PRK0002 4 Location: 182 417-183077 bp Feature: gene Location: 183328-183525 bp Feature: domain Description: RpmB Location: 183331-183517 bp Feature: domain Description: RpmB Location: 183331-183517 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ispH (PRK01045), SlpA (COG1047), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK00024 (DNA repair protein RadC), RpmB (COG0227)

Seq: BGPQ01000004.1 Cupriavidus sp. P-10 DNA, contig4, whole genome shotgun sequence (426550 bp)
Overview 1 RT 1: 366598-370117 bp Neighborhood of RT #1 [366598, 370117] PRTRC_D RVT-GII GIIM DUF5372 Feature: gene Location: 366598-367599 bp Feature: domain Description: PRTRC_D Location: 366619-367576 bp Feature: domain Description: PRTRC_D Location: 3 66619-3 67576 bp Feature: gene Location: 367611-368093 bp Feature: gene Location: 368393-369427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 368408-368996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 68408-3 68996 bp Feature: domain Description: GIIM Note: maturase Location: 369047-369257 bp Feature: domain Description: GIIM Note: maturase Location: 3 69047-3 69257 bp Feature: gene Location: 369274-369732 bp Feature: domain Description: DUF5372 Location: 369463-369694 bp Feature: domain Description: DUF53 72 Location: 3 69463 -3 69694 bp Feature: gene Location: 369842-370117 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRTRC_D (TIGR03739), RVT-GII, GIIM (pfam08388), DUF5372 (pfam17342)

Seq: BGPQ01000009.1 Cupriavidus sp. P-10 DNA, contig9, whole genome shotgun sequence (302903 bp)
Overview 1 RT 1: 194292-201930 bp Neighborhood of RT #1 [194292, 201930] RarD PBP2_TRAP_alpha-ketoacid RVT-GII GIIM HNHc Maltoporin-like Feature: gene Location: 194292-195194 bp Feature: domain Description: RarD Location: 194301-195153 bp Feature: domain Description: RarD Location: 194 301-195153 bp Feature: gene Location: 195314-196567 bp Feature: domain Description: PBP2_TRAP_alpha-ketoacid Location: 195581-196547 bp Feature: domain Description: PBP2_TRAP_alpha-ketoacid Location: 195581-19654 7 bp Feature: gene Location: 196736-198046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196739-197327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196739-197327 bp Feature: domain Description: GIIM Note: maturase Location: 197381-197612 bp Feature: domain Description: GIIM Note: maturase Location: 197381-197612 bp Feature: domain Description: HNHc Note: nucleases Location: 197837-197996 bp Feature: domain Description: HNHc Note: nucleases Location: 197837-197996 bp Feature: gene Location: 199757-201664 bp Feature: domain Description: Maltoporin-like Location: 200555-201662 bp Feature: domain Description: Maltoporin-like Location: 200555-201662 bp Feature: gene Location: 201289-201930 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RarD (COG2962), PBP2_TRAP_alpha-ketoacid (cd13682), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Maltoporin-like (cd01346)

Seq: BGPQ01000011.1 Cupriavidus sp. P-10 DNA, contig11, whole genome shotgun sequence (227897 bp)
Overview 1 RT 1: 35746-41674 bp Neighborhood of RT #1 [35746, 41682] SIRT5_Af1_CobB PRK05269 RVT-GII GIIM HNHc PRK00702 Iron_traffic Feature: gene Location: 35746-36522 bp Feature: domain Description: SIRT5_Af1_CobB Location: 35830-36493 bp Feature: domain Description: SIRT5 _Af1_CobB Location: 35 830-36493 bp Feature: gene Location: 36559-37515 bp Feature: domain Description: PRK05269 Location: 36562-37504 bp Feature: domain Description: PRK05 269 Location: 365 62-375 04 bp Feature: gene Location: 39223-40521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39226-39814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39226-39814 bp Feature: domain Description: GIIM Note: maturase Location: 39865-40099 bp Feature: domain Description: GIIM Note: maturase Location: 39865 -40099 bp Feature: domain Description: HNHc Note: nucleases Location: 40321-40483 bp Feature: domain Description: HNHc Note: nucleases Location: 40321-40483 bp Feature: gene Location: 40643-41329 bp Feature: domain Description: PRK00702 Location: 40646-41318 bp Feature: domain Description: PRK00702 Location: 40646-41318 bp Feature: gene Location: 41410-41682 bp Feature: domain Description: Iron_traffic Location: 41413-41674 bp Feature: domain Description: Iron_traffic Location: 41413-41674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SIRT5_Af1_CobB (cd01412), PRK05269 (transaldolase B; Provisional), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK00702 (ribose-5-phosphate isomerase RpiA), Iron_traffic (pfam04362)

Seq: BGPQ01000025.1 Cupriavidus sp. P-10 DNA, contig25, whole genome shotgun sequence (101693 bp)
Overview 1 RT 1: 2-5278 bp Neighborhood of RT #1 [2, 5313] PRK00174 RVT-GII GIIM HNHc RhaT PRK05208 Feature: gene Location: 2-376 bp Feature: domain Description: PRK00174 Location: 44-377 bp Feature: domain Description: PRK00174 Location: 44-377 bp Feature: gene Location: 2148-3446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2151-2739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2151-2739 bp Feature: domain Description: GIIM Note: maturase Location: 2790-3024 bp Feature: domain Description: GIIM Note: maturase Location: 2790-3024 bp Feature: domain Description: HNHc Note: nucleases Location: 3246-3408 bp Feature: domain Description: HNHc Note: nucleases Location: 3246 -3408 bp Feature: gene Location: 3589-4638 bp Feature: domain Description: RhaT Location: 3718-4573 bp Feature: domain Description: RhaT Location: 3718-4573 bp Feature: gene Location: 4777-5313 bp Feature: domain Description: PRK05208 Location: 4792-5278 bp Feature: domain Description: PRK05208 Location: 4792-5278 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00174 (acetyl-CoA synthetase; Provisional), RVT-GII, GIIM (pfam08388), HNHc (smart00507), RhaT (TIGR00776), PRK05208 (hypothetical protein; Provisional)

Seq: BGPQ01000051.1 Cupriavidus sp. P-10 DNA, contig51, whole genome shotgun sequence (41747 bp)
Overview 1 RT 1: 32103-41662 bp Neighborhood of RT #1 [32103, 41745] PRK00007 PAAR_CT_2 RVT-GII GIIM COG3179 T6SS_Vgr DUF2345 Feature: gene Location: 32103-34319 bp Feature: domain Description: PRK00007 Location: 32220-34308 bp Feature: domain Description: PRK00007 Location: 32220-34308 bp Feature: gene Location: 34580-34870 bp Feature: domain Description: PAAR_CT_2 Location: 34595-34826 bp Feature: domain Description: PAAR_CT_2 Location: 34595-34826 bp Feature: gene Location: 35922-37169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36126-36786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36126-367 86 bp Feature: domain Description: GIIM Note: maturase Location: 36867-37086 bp Feature: domain Description: GIIM Note: maturase Location: 36867 -37 086 bp Feature: gene Location: 37574-40435 bp Feature: domain Description: COG3179 Location: 39653-40286 bp Feature: domain Description: COG317 9 Location: 39653-40286 bp Feature: gene Location: 40492-41745 bp Feature: domain Description: T6SS_Vgr Location: 40858-41167 bp Feature: domain Description: T6SS_Vgr Location: 40858-41167 bp Feature: domain Description: DUF2345 Location: 41224-41662 bp Feature: domain Description: DUF2345 Location: 41224-41662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00007 (elongation factor G; Reviewed), PAAR_CT_2 (cd14744), RVT-GII, GIIM (pfam08388), COG3179 (Predicted chitinase ), T6SS_Vgr (pfam13296), DUF2345 (pfam10106)

Seq: BGPQ01000072.1 Cupriavidus sp. P-10 DNA, contig72, whole genome shotgun sequence (7651 bp)
Overview 1 RT 1: 3-2827 bp Neighborhood of RT #1 [3, 2853] RVT-GII xerC Feature: gene Location: 3-275 bp Feature: gene Location: 334-1824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 703-1390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 703-1390 bp Feature: gene Location: 1760-2146 bp Feature: gene Location: 2143-2853 bp Feature: domain Description: xerC Location: 2629-2827 bp Feature: domain Description: xerC Location: 2629-28 27 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, xerC (PRK01287)

Seq: BGPQ01000082.1 Cupriavidus sp. P-10 DNA, contig82, whole genome shotgun sequence (3636 bp)
Overview 1 RT 1: 57-3569 bp Neighborhood of RT #1 [57, 3586] InsE RVT-GII GIIM Tra5 Feature: gene Location: 57-461 bp Feature: domain Description: InsE Location: 75-351 bp Feature: domain Description: InsE Location: 75-351 bp Feature: gene Location: 578-883 bp Feature: gene Location: 1509-3041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1782-2520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1782-2520 bp Feature: domain Description: GIIM Note: maturase Location: 2631-2802 bp Feature: domain Description: GIIM Note: maturase Location: 2631-2802 bp Feature: gene Location: 3194-3586 bp Feature: domain Description: Tra5 Location: 3197-3569 bp Feature: domain Description: Tra5 Location: 319 7-3569 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), Tra5 (COG2801)

Seq: BGPQ01000093.1 Cupriavidus sp. P-10 DNA, contig93, whole genome shotgun sequence (1979 bp)
Overview 1 RT 1: 2-1976 bp Neighborhood of RT #1 [2, 1976] RVT_N RVT-GII GIIM Feature: gene Location: 2-1369 bp Feature: domain Description: RVT_N Location: 65-299 bp Feature: domain Description: RVT_N Location: 65-299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 353-995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 353-995 bp Feature: domain Description: GIIM Note: maturase Location: 1046-1280 bp Feature: domain Description: GIIM Note: maturase Location: 10 46-1280 bp Feature: gene Location: 1535-1663 bp Feature: gene Location: 1746-1976 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: BGPQ01000095.1 Cupriavidus sp. P-10 DNA, contig95, whole genome shotgun sequence (1880 bp)
Overview 1 RT 1: 77-1307 bp Neighborhood of RT #1 [77, 1414] RVT-GII GIIM Feature: gene Location: 77-1414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 428-1049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 428-1049 bp Feature: domain Description: GIIM Note: maturase Location: 1100-1307 bp Feature: domain Description: GIIM Note: maturase Location: 11 00-1307 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)