myRT

myRT report for GCA_003402995.1_ASM340299v1

Download annotations/find similar RTs

Seq: QURI01000003.1 Klebsiella pneumoniae strain KP47432 plasmid pKPC-KP47434, whole genome shotgun sequence (133772 bp)
Overview 1 RT 1: 23672-27112 bp 2 RT 2: 98952-103034 bp Neighborhood of RT #1 [23672, 27112] DUF1380 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [98952, 103171] PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 23672-24094 bp Feature: domain Description: DUF1380 Location: 23675-23969 bp Feature: domain Description: DUF1 380 Location: 23675-23969 bp Feature: gene Location: 24091-24282 bp Feature: gene Location: 24596-26263 bp Feature: RT Description: RVT_N Location: 24644-24881 bp Feature: RT Description: RVT_N Location: 24644-24881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24932-25574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24932-25574 bp Feature: domain Description: GIIM Note: maturase Location: 25625-25859 bp Feature: domain Description: GIIM Note: maturase Location: 25625-25859 bp Feature: domain Description: HNHc Note: nucleases Location: 26069-26228 bp Feature: domain Description: HNHc Note: nucleases Location: 26069-26228 bp Feature: gene Location: 26543-26725 bp Feature: gene Location: 26837-27112 bp Feature: gene Location: 98952-99383 bp Feature: domain Description: PRK10276 Location: 99003-99366 bp Feature: domain Description: PRK1 0276 Location: 99003-99366 bp Feature: gene Location: 99581-99793 bp Feature: gene Location: 99868-101277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100195-100885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 001 95-1 00885 bp Feature: gene Location: 101526-102497 bp Feature: domain Description: StbA Location: 101529-102474 bp Feature: domain Description: StbA Location: 1 01 529-1 02474 bp Feature: gene Location: 102500-103171 bp Feature: domain Description: Plasmid_stab_B Location: 102515-102722 bp Feature: domain Description: Plasmid_stab_B Location: 1 0251 5-1 02722 bp Feature: domain Description: Plasmid_stab_B Location: 102827-103034 bp Feature: domain Description: Plasmid_stab_B Location: 1 02827-1 03034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), StbA (pfam06406), Plasmid_stab_B (pfam10784), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: QURI01000001.1 Klebsiella pneumoniae strain KP47432, whole genome shotgun sequence (5406566 bp)
Overview 1 RT 1: 37936-43085 bp 2 RT 2: 190328-194181 bp 3 RT 3: 262887-267582 bp 4 RT 4: 631897-634802 bp 5 RT 5: 3586709-3592442 bp 6 RT 6: 3752285-3755680 bp 7 RT 7: 4211673-4218144 bp Neighborhood of RT #1 [37936, 43093] umuC PRK10276 RVT-GII PinE Neighborhood of RT #2 [190328, 194181] umuC PRK10276 RVT-GII Neighborhood of RT #3 [262887, 267620] LexA_DNA_bind PRK10597 RVT-GII PRK05318 Neighborhood of RT #4 [631897, 634852] RVT-GII int Neighborhood of RT #5 [3586709, 3592447] dam Phage_GPA RVT-GII DinI Neighborhood of RT #6 [3752285, 3755680] RVT-GII Neighborhood of RT #7 [4211673, 4218158] SbcB dacD RVT-GII PRK10016 YccC Feature: gene Location: 37936-39201 bp Feature: domain Description: umuC Location: 37939-39199 bp Feature: domain Description: umuC Location: 37939-39199 bp Feature: gene Location: 39203-39622 bp Feature: domain Description: PRK10276 Location: 39206-39617 bp Feature: domain Description: PRK102 76 Location: 392 06-39617 bp Feature: gene Location: 39702-41186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40104-40794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40104-40794 bp Feature: gene Location: 41195-41362 bp Feature: gene Location: 42584-43093 bp Feature: domain Description: PinE Location: 42632-43085 bp Feature: domain Description: PinE Location: 42 632 -43085 bp Feature: gene Location: 190328-191593 bp Feature: domain Description: umuC Location: 190331-191591 bp Feature: domain Description: umuC Location: 190331-191591 bp Feature: gene Location: 191596-192015 bp Feature: domain Description: PRK10276 Location: 191599-192010 bp Feature: domain Description: PRK102 76 Location: 191599-192 010 bp Feature: gene Location: 192094-193578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192496-193186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192 496-193186 bp Feature: gene Location: 193587-193754 bp Feature: gene Location: 194035-194181 bp Feature: gene Location: 262887-263279 bp Feature: domain Description: LexA_DNA_bind Location: 262965-263154 bp Feature: domain Description: LexA_DNA_bind Location: 2 62 965-2 63154 bp Feature: gene Location: 263622-263855 bp Feature: domain Description: PRK10597 Location: 263625-263850 bp Feature: domain Description: PRK10597 Location: 2 6362 5-2 63850 bp Feature: gene Location: 263934-265418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 264336-265026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 64336-2 6502 6 bp Feature: gene Location: 265427-265594 bp Feature: gene Location: 266259-267620 bp Feature: domain Description: PRK05318 Location: 266283-267582 bp Feature: domain Description: PRK05318 Location: 2 662 83-2 67582 bp Feature: gene Location: 631897-633381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 632299-632989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 632 2 99-632 989 bp Feature: gene Location: 633390-633557 bp Feature: gene Location: 633800-634852 bp Feature: domain Description: int Location: 633803-634802 bp Feature: domain Description: int Location: 633803-634802 bp Feature: gene Location: 3586709-3587560 bp Feature: domain Description: dam Location: 3586712-3587483 bp Feature: domain Description: dam Location: 3586712 -3587483 bp Feature: gene Location: 3587557-3589941 bp Feature: domain Description: Phage_GPA Location: 3588121-3589087 bp Feature: domain Description: Phage_GPA Location: 358812 1-3589087 bp Feature: gene Location: 3590419-3591906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3590824-3591514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 359082 4-3591514 bp Feature: gene Location: 3592014-3592202 bp Feature: gene Location: 3592214-3592447 bp Feature: domain Description: DinI Location: 3592259-3592442 bp Feature: domain Description: DinI Location: 3592 2 59-3592 442 bp Feature: gene Location: 3752285-3752905 bp Feature: gene Location: 3753101-3753439 bp Feature: gene Location: 3753536-3755020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3753938-3754628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3753938-375462 8 bp Feature: gene Location: 3755177-3755395 bp Feature: gene Location: 3755423-3755680 bp Feature: gene Location: 4211673-4213097 bp Feature: domain Description: SbcB Location: 4211679-4213095 bp Feature: domain Description: SbcB Location: 42 11679-42 13095 bp Feature: gene Location: 4213272-4214441 bp Feature: domain Description: dacD Location: 4213281-4214436 bp Feature: domain Description: dacD Location: 42 132 81-42 14436 bp Feature: gene Location: 4214959-4216446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4215364-4216054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 15364-42 16054 bp Feature: gene Location: 4216528-4217001 bp Feature: domain Description: PRK10016 Location: 4216531-4216990 bp Feature: domain Description: PRK10016 Location: 42 16531-42 16990 bp Feature: gene Location: 4217085-4218158 bp Feature: domain Description: YccC Location: 4217106-4218144 bp Feature: domain Description: YccC Location: 42 17106-42 18144 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, PinE (COG1961), LexA_DNA_bind (pfam01726), PRK10597 (DNA damage-inducible protein I; Provisional), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), int (PHA02601), dam (TIGR00571), Phage_GPA (pfam05840)
DinI (pfam06183), SbcB (COG2925), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289)

Seq: QURI01000004.1 Klebsiella pneumoniae strain KP47432, whole genome shotgun sequence (79128 bp)
Overview 1 RT 1: 1189-4889 bp Neighborhood of RT #1 [1189, 4987] umuC PRK10276 RVT-GII DUF2913 Feature: gene Location: 1189-1968 bp Feature: domain Description: umuC Location: 1192-1954 bp Feature: domain Description: umuC Location: 1192-1954 bp Feature: gene Location: 1968-2393 bp Feature: domain Description: PRK10276 Location: 2019-2379 bp Feature: domain Description: PRK10276 Location: 2019-23 79 bp Feature: gene Location: 2471-3958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2876-3566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2876-3 566 bp Feature: gene Location: 3964-4131 bp Feature: gene Location: 4373-4987 bp Feature: domain Description: DUF2913 Location: 4403-4889 bp Feature: domain Description: DUF2913 Location: 4403 -4889 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, DUF2913 (pfam11140)

Seq: QURI01000006.1 Klebsiella pneumoniae strain KP47432, whole genome shotgun sequence (11970 bp)
Overview 1 RT 1: 8652-11576 bp Neighborhood of RT #1 [8652, 11968] Cloacin_immun Cloacin E2R135 Cytotoxic RVT-GII Feature: gene Location: 8652-8909 bp Feature: domain Description: Cloacin_immun Location: 8658-8895 bp Feature: domain Description: Cloacin_immun Location: 8658-8895 bp Feature: gene Location: 8919-10604 bp Feature: domain Description: Cloacin Location: 9054-9876 bp Feature: domain Description: Cloacin Location: 9054 -9876 bp Feature: domain Description: E2R135 Location: 9885-10290 bp Feature: domain Description: E2R135 Location: 9885-10290 bp Feature: domain Description: Cytotoxic Location: 10344-10593 bp Feature: domain Description: Cytotoxic Location: 1034 4 -10593 bp Feature: gene Location: 10709-11968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10886-11576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10886-11576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Cloacin_immun (pfam03513), Cloacin (pfam03515), E2R135 (pfam11570), Cytotoxic (pfam09000)