myRT

myRT report for GCA_003410395.1_ASM341039v1

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Seq: CM010665.1 Klebsiella pneumoniae strain KP16932 plasmid pKPC-KP16932, complete sequence, whole genome shotgun sequence (158277 bp)
Overview 1 RT 1: 66275-70464 bp 2 RT 2: 144328-148526 bp Neighborhood of RT #1 [66275, 70464] Plasmid_stab_B Plasmid_stab_B StbA RVT-GII Neighborhood of RT #2 [144328, 148528] RVT_N RVT-GII GIIM HNHc DUF1380 Antirestrict Feature: gene Location: 66275-66946 bp Feature: domain Description: Plasmid_stab_B Location: 66290-66497 bp Feature: domain Description: Plasmid_stab_B Location: 66290-66497 bp Feature: domain Description: Plasmid_stab_B Location: 66602-66809 bp Feature: domain Description: Plasmid_stab_B Location: 66602-66809 bp Feature: gene Location: 66949-67920 bp Feature: domain Description: StbA Location: 66952-67897 bp Feature: domain Description: StbA Location: 66952-67897 bp Feature: gene Location: 68169-69656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68574-69264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68574-69264 bp Feature: gene Location: 69662-69829 bp Feature: gene Location: 70069-70464 bp Feature: gene Location: 144328-144585 bp Feature: gene Location: 144616-144891 bp Feature: gene Location: 145465-147132 bp Feature: RT Description: RVT_N Location: 145513-145750 bp Feature: RT Description: RVT_N Location: 1 4551 3-1 45750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145801-146443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 45801 -1 46443 bp Feature: domain Description: GIIM Note: maturase Location: 146494-146728 bp Feature: domain Description: GIIM Note: maturase Location: 1 46494-1 46728 bp Feature: domain Description: HNHc Note: nucleases Location: 146938-147097 bp Feature: domain Description: HNHc Note: nucleases Location: 1 46938-1 47097 bp Feature: gene Location: 147634-148056 bp Feature: domain Description: DUF1380 Location: 147637-147931 bp Feature: domain Description: DUF1 380 Location: 1 47637-1 47931 bp Feature: gene Location: 148103-148528 bp Feature: domain Description: Antirestrict Location: 148238-148526 bp Feature: domain Description: Antirestrict Location: 1 48238-1 48526 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Plasmid_stab_B (pfam10784), StbA (pfam06406), RVT-GII, RVT_N (pfam13655), GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128), Antirestrict (pfam03230)

Seq: CM010666.1 Klebsiella pneumoniae strain KP16932 plasmid pvir-KP16932, complete sequence, whole genome shotgun sequence (177779 bp)
Overview 1 RT 1: 160288-164827 bp Neighborhood of RT #1 [160288, 164886] DDE_Tnp_1_5 HHA RVT-GII RVT-GII group_II_RT_mat INT_Cre_C Feature: gene Location: 160288-161256 bp Feature: domain Description: DDE_Tnp_1_5 Location: 160390-160723 bp Feature: domain Description: DDE_Tnp_1_5 Location: 160390-16072 3 bp Feature: gene Location: 161411-161662 bp Feature: domain Description: HHA Location: 161459-161642 bp Feature: domain Description: HHA Location: 161459-161642 bp Feature: gene Location: 161971-162777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162583-162727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162 583-162 72 7 bp Feature: gene Location: 162893-163186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162911-163151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162 911-163151 bp Feature: gene Location: 163305-163664 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 163314-163530 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 163314-163530 bp Feature: gene Location: 163750-164886 bp Feature: domain Description: INT_Cre_C Location: 164173-164827 bp Feature: domain Description: INT_Cre_C Location: 164173-16482 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_5 (pfam13737), HHA (pfam05321), RVT-GII, group_II_RT_mat (TIGR04416), INT_Cre_C (cd00799)

Seq: QVAN01000001.1 Klebsiella pneumoniae strain KP16932, whole genome shotgun sequence (4689177 bp)
Overview 1 RT 1: 1092200-1095449 bp 2 RT 2: 1099721-1105480 bp 3 RT 3: 1419245-1425537 bp 4 RT 4: 1494258-1498366 bp 5 RT 5: 1644556-1650433 bp 6 RT 6: 1723848-1730584 bp 7 RT 7: 2903806-2908687 bp 8 RT 8: 3358530-3362588 bp 9 RT 9: 3521120-3525156 bp Neighborhood of RT #1 [1092200, 1095841] YbjK int RVT-GII Neighborhood of RT #2 [1099721, 1105485] dam Phage_GPA RVT-GII DinI Neighborhood of RT #3 [1419245, 1425537] HTH_28 rve PRK05318 RVT-GII PRK10597 Neighborhood of RT #4 [1494258, 1498368] DinI RVT-GII PRK10276 umuC Neighborhood of RT #5 [1644556, 1650435] Rve PinE RVT-GII PRK10276 umuC Neighborhood of RT #6 [1723848, 1730589] Laminin_G_3 RVT-GII PRK10597 Neighborhood of RT #7 [2903806, 2908692] YccC PRK10016 RVT-GII dacD Neighborhood of RT #8 [3358530, 3362588] Terminase_2 RVT-GII Neighborhood of RT #9 [3521120, 3526010] DinI RVT-GII Phage_GPA Feature: gene Location: 1092200-1092763 bp Feature: domain Description: YbjK Location: 1092206-1092743 bp Feature: domain Description: YbjK Location: 1092206-1092743 bp Feature: gene Location: 1092886-1093938 bp Feature: domain Description: int Location: 1092889-1093888 bp Feature: domain Description: int Location: 1092889-1093 888 bp Feature: gene Location: 1094354-1095841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1094759-1095449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1094759-1095449 bp Feature: gene Location: 1099721-1100578 bp Feature: domain Description: dam Location: 1099724-1100501 bp Feature: domain Description: dam Location: 1099724-1100501 bp Feature: gene Location: 1100575-1102989 bp Feature: domain Description: Phage_GPA Location: 1101139-1102105 bp Feature: domain Description: Phage_GPA Location: 110113 9-1102105 bp Feature: gene Location: 1103465-1104952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1103870-1104560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1103 870-1104560 bp Feature: gene Location: 1105053-1105241 bp Feature: gene Location: 1105252-1105485 bp Feature: domain Description: DinI Location: 1105294-1105480 bp Feature: domain Description: DinI Location: 1105294-1105480 bp Feature: gene Location: 1419245-1420291 bp Feature: domain Description: HTH_28 Location: 1419368-1419488 bp Feature: domain Description: HTH_28 Location: 14193 68-1419488 bp Feature: domain Description: rve Location: 1419776-1420106 bp Feature: domain Description: rve Location: 1419776-1420106 bp Feature: gene Location: 1421237-1422598 bp Feature: domain Description: PRK05318 Location: 1421261-1422560 bp Feature: domain Description: PRK053 18 Location: 1421261-1422560 bp Feature: gene Location: 1423436-1424923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1423841-1424531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1423 841-142453 1 bp Feature: gene Location: 1425002-1425235 bp Feature: domain Description: PRK10597 Location: 1425005-1425230 bp Feature: domain Description: PRK10597 Location: 1425005-142523 0 bp Feature: gene Location: 1425280-1425537 bp Feature: gene Location: 1494258-1494500 bp Feature: domain Description: DinI Location: 1494309-1494489 bp Feature: domain Description: DinI Location: 14943 09-1494489 bp Feature: gene Location: 1494515-1494661 bp Feature: gene Location: 1495115-1496602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1495520-1496210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1495520-1496210 bp Feature: gene Location: 1496681-1497100 bp Feature: domain Description: PRK10276 Location: 1496684-1497095 bp Feature: domain Description: PRK10276 Location: 1496684-1497095 bp Feature: gene Location: 1497103-1498368 bp Feature: domain Description: umuC Location: 1497106-1498366 bp Feature: domain Description: umuC Location: 1497106-14983 66 bp Feature: gene Location: 1644556-1645272 bp Feature: domain Description: Rve Location: 1644571-1645216 bp Feature: domain Description: Rve Location: 1644571-1645216 bp Feature: gene Location: 1645278-1645787 bp Feature: domain Description: PinE Location: 1645326-1645779 bp Feature: domain Description: PinE Location: 16453 26-1645779 bp Feature: gene Location: 1647182-1648669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1647587-1648277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1647587-1648277 bp Feature: gene Location: 1648749-1649168 bp Feature: domain Description: PRK10276 Location: 1648752-1649163 bp Feature: domain Description: PRK10276 Location: 1648752-1649163 bp Feature: gene Location: 1649170-1650435 bp Feature: domain Description: umuC Location: 1649173-1650433 bp Feature: domain Description: umuC Location: 1649173 -165043 3 bp Feature: gene Location: 1723848-1726871 bp Feature: gene Location: 1726882-1727613 bp Feature: domain Description: Laminin_G_3 Location: 1727218-1727557 bp Feature: domain Description: Laminin_G_3 Location: 1727218-1727557 bp Feature: gene Location: 1728269-1729756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1728674-1729364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1728674-17293 64 bp Feature: gene Location: 1729816-1730025 bp Feature: gene Location: 1730341-1730589 bp Feature: domain Description: PRK10597 Location: 1730344-1730584 bp Feature: domain Description: PRK10597 Location: 173 03 44-173 0584 bp Feature: gene Location: 2903806-2904864 bp Feature: domain Description: YccC Location: 2903812-2904850 bp Feature: domain Description: YccC Location: 2903 812-2904850 bp Feature: gene Location: 2904963-2905436 bp Feature: domain Description: PRK10016 Location: 2904966-2905425 bp Feature: domain Description: PRK10016 Location: 2904966-2905425 bp Feature: gene Location: 2905518-2907002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2905920-2906610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2905920-2906610 bp Feature: gene Location: 2907011-2907178 bp Feature: gene Location: 2907523-2908692 bp Feature: domain Description: dacD Location: 2907532-2908687 bp Feature: domain Description: dacD Location: 290753 2-2908687 bp Feature: gene Location: 3358530-3359114 bp Feature: domain Description: Terminase_2 Location: 3358575-3359040 bp Feature: domain Description: Terminase_2 Location: 3 3 58575-3 3 59040 bp Feature: gene Location: 3359192-3359449 bp Feature: gene Location: 3359850-3361337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3360255-3360945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 60255-3 3 60945 bp Feature: gene Location: 3361434-3361772 bp Feature: gene Location: 3361968-3362588 bp Feature: gene Location: 3521120-3521353 bp Feature: domain Description: DinI Location: 3521165-3521348 bp Feature: domain Description: DinI Location: 3 521165-3 5213 48 bp Feature: gene Location: 3521365-3521553 bp Feature: gene Location: 3521661-3523145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3522063-3522753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 522063 -3 522753 bp Feature: gene Location: 3523154-3523321 bp Feature: gene Location: 3523626-3526010 bp Feature: domain Description: Phage_GPA Location: 3524190-3525156 bp Feature: domain Description: Phage_GPA Location: 3 524190-3 525156 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjK (COG3226), int (PHA02601), RVT-GII, dam (TIGR00571), Phage_GPA (pfam05840), DinI (pfam06183), HTH_28 (pfam13518), rve (pfam00665), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), PRK10597 (DNA damage-inducible protein I; Provisional)
PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), Rve (COG3316), PinE (COG1961), Laminin_G_3 (pfam13385), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), Terminase_2 (pfam03592)

Seq: QVAN01000012.1 Klebsiella pneumoniae strain KP16932, whole genome shotgun sequence (11970 bp)
Overview 1 RT 1: 3701-8135 bp Neighborhood of RT #1 [3701, 8135] Cloacin_immun Cloacin E2R135 Cytotoxic RVT-GII Feature: gene Location: 3701-3958 bp Feature: domain Description: Cloacin_immun Location: 3707-3944 bp Feature: domain Description: Cloacin_immun Location: 3707-394 4 bp Feature: gene Location: 3968-5653 bp Feature: domain Description: Cloacin Location: 4103-4925 bp Feature: domain Description: Cloacin Location: 4 103-4 925 bp Feature: domain Description: E2R135 Location: 4934-5339 bp Feature: domain Description: E2R135 Location: 4 934 -5339 bp Feature: domain Description: Cytotoxic Location: 5393-5642 bp Feature: domain Description: Cytotoxic Location: 5393-564 2 bp Feature: gene Location: 5758-7245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6163-6853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6163-6853 bp Feature: gene Location: 7251-7418 bp Feature: gene Location: 7890-8135 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cloacin_immun (pfam03513), Cloacin (pfam03515), E2R135 (pfam11570), Cytotoxic (pfam09000), RVT-GII

Seq: QVAN01000006.1 Klebsiella pneumoniae strain KP16932, whole genome shotgun sequence (117259 bp)
Overview 1 RT 1: 47168-50723 bp Neighborhood of RT #1 [47168, 50723] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 47168-47590 bp Feature: domain Description: DUF1380 Location: 47171-47465 bp Feature: domain Description: DUF1380 Location: 47171-47465 bp Feature: gene Location: 47642-47836 bp Feature: gene Location: 48091-49758 bp Feature: RT Description: RVT_N Location: 48139-48376 bp Feature: RT Description: RVT_N Location: 48139-48376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48427-49069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48427-49069 bp Feature: domain Description: GIIM Note: maturase Location: 49120-49354 bp Feature: domain Description: GIIM Note: maturase Location: 49120-4935 4 bp Feature: domain Description: HNHc Note: nucleases Location: 49564-49723 bp Feature: domain Description: HNHc Note: nucleases Location: 495 64-49723 bp Feature: gene Location: 50038-50220 bp Feature: gene Location: 50472-50723 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)