myRT

myRT report for GCA_003410475.1_ASM341047v1

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Seq: QVAQ01000003.1 Pseudomonas aeruginosa strain PABL107 NODE_3_length_398951_cov_66.2436, whole genome shotgun sequence (398951 bp)
Overview 1 RT 1: 61412-70270 bp 2 RT 2: 86535-96069 bp Neighborhood of RT #1 [61412, 70278] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [86535, 96092] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH INT_Rci_Hp1_C Feature: gene Location: 61412-62086 bp Feature: domain Description: NTP_transferase_like_1 Location: 61418-62057 bp Feature: domain Description: NTP_transferase_like_1 Location: 61 41 8-62057 bp Feature: gene Location: 62083-63099 bp Feature: domain Description: COG3178 Location: 62086-63085 bp Feature: domain Description: COG31 78 Location: 62086-63085 bp Feature: gene Location: 64371-66083 bp Feature: RT Description: RVT_N Location: 64428-64671 bp Feature: RT Description: RVT_N Location: 64428-64671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64716-65352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6471 6-65352 bp Feature: domain Description: YkfC Location: 65562-65712 bp Feature: domain Description: YkfC Location: 65562-6571 2 bp Feature: domain Description: HNH Note: nucleases Location: 65889-66027 bp Feature: domain Description: HNH Note: nucleases Location: 65889-66027 bp Feature: gene Location: 66216-69005 bp Feature: domain Description: LptD Location: 66411-68991 bp Feature: domain Description: LptD Location: 6641 1 -68991 bp Feature: gene Location: 69064-70278 bp Feature: domain Description: PRK10770 Location: 69076-70270 bp Feature: domain Description: PRK1 0770 Location: 69076-70270 bp Feature: gene Location: 86535-88388 bp Feature: domain Description: PRK05658 Location: 86547-88386 bp Feature: domain Description: PRK05658 Location: 86547-88386 bp Feature: gene Location: 88495-92232 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 88603-89260 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 88603-89260 bp Feature: domain Description: PRK09776 Location: 89473-89944 bp Feature: domain Description: PRK09776 Location: 89473-89944 bp Feature: domain Description: PAS Location: 89989-90526 bp Feature: domain Description: PAS Location: 89989-90526 bp Feature: domain Description: PRK10060 Location: 90535-92182 bp Feature: domain Description: PRK1 0060 Location: 90535-921 82 bp Feature: gene Location: 93313-94998 bp Feature: RT Description: RVT_N Location: 93370-93610 bp Feature: RT Description: RVT_N Location: 93370-9361 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93658-94294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93658-94294 bp Feature: domain Description: GIIM Note: maturase Location: 94348-94579 bp Feature: domain Description: GIIM Note: maturase Location: 94348-94579 bp Feature: domain Description: HNH Note: nucleases Location: 94831-94969 bp Feature: domain Description: HNH Note: nucleases Location: 94831 -94969 bp Feature: gene Location: 95301-96092 bp Feature: domain Description: INT_Rci_Hp1_C Location: 95811-96069 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 9581 1 -96069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), INT_Rci_Hp1_C (cd00796)

Seq: QVAQ01000044.1 Pseudomonas aeruginosa strain PABL107 NODE_44_length_36781_cov_72.0835, whole genome shotgun sequence (36781 bp)
Overview 1 RT 1: 28429-33025 bp Neighborhood of RT #1 [28429, 33108] IS5 RVT-GII GIIM IS5 ABC_phnC Feature: gene Location: 28429-28800 bp Feature: gene Location: 28989-29447 bp Feature: domain Description: IS5 Location: 28992-29421 bp Feature: domain Description: IS5 Location: 2 8992 -2 942 1 bp Feature: gene Location: 29519-30787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29732-30389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 9732 -30389 bp Feature: domain Description: GIIM Note: maturase Location: 30467-30689 bp Feature: domain Description: GIIM Note: maturase Location: 30467-30689 bp Feature: gene Location: 31280-31819 bp Feature: domain Description: IS5 Location: 31469-31796 bp Feature: domain Description: IS5 Location: 31469-31796 bp Feature: gene Location: 32281-33108 bp Feature: domain Description: ABC_phnC Location: 32311-33025 bp Feature: domain Description: ABC_phnC Location: 32 311-3302 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT-GII, GIIM (pfam08388), ABC_phnC (TIGR02315)