myRT

myRT report for GCA_003410505.1_ASM341050v1

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Seq: QVBG01000003.1 Pseudomonas aeruginosa strain PABL090 NODE_3_length_259455_cov_64.2585, whole genome shotgun sequence (259455 bp)
Overview 1 RT 1: 165458-175764 bp Neighborhood of RT #1 [165458, 175766] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 165458-166579 bp Feature: domain Description: COG3177 Location: 165476-166568 bp Feature: domain Description: COG31 77 Location: 1 65476-1 66568 bp Feature: gene Location: 166838-166975 bp Feature: gene Location: 167303-168988 bp Feature: RT Description: RVT_N Location: 167360-167600 bp Feature: RT Description: RVT_N Location: 1 67360-1 67600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 167648-168284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 67648-1 68284 bp Feature: domain Description: GIIM Note: maturase Location: 168338-168569 bp Feature: domain Description: GIIM Note: maturase Location: 1 68338-1 68569 bp Feature: domain Description: HNH Note: nucleases Location: 168821-168959 bp Feature: domain Description: HNH Note: nucleases Location: 1 68821 -1 68959 bp Feature: gene Location: 170069-173806 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 170177-170834 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 701 77-1 70834 bp Feature: domain Description: PRK09776 Location: 171047-171518 bp Feature: domain Description: PRK09776 Location: 1 71 047-1 71 51 8 bp Feature: domain Description: PAS Location: 171590-172100 bp Feature: domain Description: PAS Location: 1 71 590-1 721 00 bp Feature: domain Description: PRK10060 Location: 172109-173756 bp Feature: domain Description: PRK1 0060 Location: 1 721 09-1 73756 bp Feature: gene Location: 173913-175766 bp Feature: domain Description: PRK05658 Location: 173925-175764 bp Feature: domain Description: PRK05658 Location: 1 73925-1 75764 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)