myRT

myRT report for GCA_003410645.2_ASM341064v2

Download annotations/find similar RTs

Seq: QVBH02000001.1 Pseudomonas aeruginosa strain PABL089 NODE_1_length_232856_cov_72.8057, whole genome shotgun sequence (232856 bp)
Overview 1 RT 1: 133338-144585 bp 2 RT 2: 160844-169667 bp Neighborhood of RT #1 [133338, 144587] NERD zf-C4_Topoisom COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [160844, 169696] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 133338-134108 bp Feature: domain Description: NERD Location: 133437-133770 bp Feature: domain Description: NERD Location: 1 33437-1 33770 bp Feature: domain Description: zf-C4_Topoisom Location: 133989-134103 bp Feature: domain Description: zf-C4_Topoisom Location: 1 33989-1 341 03 bp Feature: gene Location: 134280-135401 bp Feature: domain Description: COG3177 Location: 134298-135390 bp Feature: domain Description: COG31 77 Location: 1 34298-1 35390 bp Feature: gene Location: 136124-137809 bp Feature: domain Description: RVT_N Location: 136181-136421 bp Feature: domain Description: RVT_N Location: 1 361 81 -1 36421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136469-137105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 36469-1 371 05 bp Feature: domain Description: GIIM Note: maturase Location: 137159-137390 bp Feature: domain Description: GIIM Note: maturase Location: 1 371 59-1 37390 bp Feature: domain Description: HNH Note: nucleases Location: 137642-137780 bp Feature: domain Description: HNH Note: nucleases Location: 1 37642-1 37780 bp Feature: gene Location: 138890-142627 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 138998-139655 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 38998-1 39655 bp Feature: domain Description: PRK09776 Location: 139868-140339 bp Feature: domain Description: PRK09776 Location: 1 39868-1 40339 bp Feature: domain Description: PAS Location: 140396-140921 bp Feature: domain Description: PAS Location: 1 40396-1 40921 bp Feature: domain Description: PRK10060 Location: 140933-142577 bp Feature: domain Description: PRK1 0060 Location: 1 40933-1 42577 bp Feature: gene Location: 142734-144587 bp Feature: domain Description: PRK05658 Location: 142746-144585 bp Feature: domain Description: PRK05658 Location: 1 42746-1 44585 bp Feature: gene Location: 160844-162058 bp Feature: domain Description: PRK10770 Location: 160856-162050 bp Feature: domain Description: PRK1 0770 Location: 1 60856-1 62050 bp Feature: gene Location: 162117-164891 bp Feature: domain Description: LptD Location: 162312-164877 bp Feature: domain Description: LptD Location: 1 6231 2-1 64877 bp Feature: gene Location: 165024-166736 bp Feature: domain Description: RVT_N Location: 165081-165324 bp Feature: domain Description: RVT_N Location: 1 65081 -1 65324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165369-166005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 65369-1 66005 bp Feature: domain Description: YkfC Location: 166212-166365 bp Feature: domain Description: YkfC Location: 1 6621 2-1 66365 bp Feature: domain Description: HNH Note: nucleases Location: 166542-166680 bp Feature: domain Description: HNH Note: nucleases Location: 1 66542-1 66680 bp Feature: gene Location: 168009-169025 bp Feature: domain Description: COG3178 Location: 168012-169011 bp Feature: domain Description: COG31 78 Location: 1 6801 2-1 6901 1 bp Feature: gene Location: 169022-169696 bp Feature: domain Description: NTP_transferase_like_1 Location: 169028-169667 bp Feature: domain Description: NTP_transferase_like_1 Location: 1 69028-1 69667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), zf-C4_Topoisom (pfam01396), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091)
PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: QVBH02000038.1 Pseudomonas aeruginosa strain PABL089 NODE_38_length_66197_cov_84.1213, whole genome shotgun sequence (66197 bp)
Overview 1 RT 1: 128-4699 bp Neighborhood of RT #1 [128, 4911] RVT-UG5 nitrilase COG4127 TIGR02646 Feature: gene Location: 128-2608 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 131-560 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 131-560 bp Feature: domain Description: nitrilase Location: 1922-2504 bp Feature: domain Description: nitrilase Location: 192 2 -2 504 bp Feature: gene Location: 2978-3970 bp Feature: domain Description: COG4127 Location: 2984-3959 bp Feature: domain Description: COG412 7 Location: 2 984-3959 bp Feature: gene Location: 4033-4911 bp Feature: domain Description: TIGR02646 Location: 4246-4699 bp Feature: domain Description: TIGR02 646 Location: 42 46-4699 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), TIGR02646 (TIGR02646 family protein)

Seq: QVBH02000090.1 Pseudomonas aeruginosa strain PABL089 NODE_90_length_14047_cov_87.4385, whole genome shotgun sequence (14047 bp)
Overview 1 RT 1: 270-5747 bp Neighborhood of RT #1 [270, 5785] IS5 RVT-GII GIIM IS5 Creatinase_N Creatinase Feature: gene Location: 270-398 bp Feature: gene Location: 1561-2100 bp Feature: domain Description: IS5 Location: 1750-2077 bp Feature: domain Description: IS5 Location: 1750-2077 bp Feature: gene Location: 2593-3861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2806-3463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2806-3 463 bp Feature: domain Description: GIIM Note: maturase Location: 3541-3763 bp Feature: domain Description: GIIM Note: maturase Location: 3 541-3 763 bp Feature: gene Location: 3771-4391 bp Feature: domain Description: IS5 Location: 3921-4362 bp Feature: domain Description: IS5 Location: 3 921-43 62 bp Feature: gene Location: 4574-5785 bp Feature: domain Description: Creatinase_N Location: 4655-5048 bp Feature: domain Description: Creatinase_N Location: 4655-5048 bp Feature: domain Description: Creatinase Location: 5069-5747 bp Feature: domain Description: Creatinase Location: 5069-5747 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT-GII, GIIM (pfam08388), Creatinase_N (pfam01321), Creatinase (cd01090)