myRT

myRT report for GCA_003410695.2_ASM341069v2

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Seq: QVAY02000023.1 Pseudomonas aeruginosa strain PABL098 NODE_23_length_66873_cov_58.9463, whole genome shotgun sequence (66873 bp)
Overview 1 RT 1: 9534-16681 bp Neighborhood of RT #1 [9534, 16845] STN TonB-siderophor YHI9 RVT-UG2 PRK06333 HxlR Feature: gene Location: 9534-11936 bp Feature: domain Description: STN Location: 9654-9807 bp Feature: domain Description: STN Location: 9654-9807 bp Feature: domain Description: TonB-siderophor Location: 9915-11874 bp Feature: domain Description: TonB-siderophor Location: 991 5-1 1 874 bp Feature: gene Location: 12097-12933 bp Feature: domain Description: YHI9 Location: 12109-12925 bp Feature: domain Description: YHI9 Location: 1 21 09-1 2925 bp Feature: gene Location: 13117-14463 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 13366-14152 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1 3366-1 41 52 bp Feature: gene Location: 14962-16230 bp Feature: domain Description: PRK06333 Location: 14968-16225 bp Feature: domain Description: PRK06333 Location: 1 4968-1 6225 bp Feature: gene Location: 16339-16845 bp Feature: domain Description: HxlR Location: 16363-16681 bp Feature: domain Description: HxlR Location: 1 6363-1 6681 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STN (smart00965), TonB-siderophor (TIGR01783), YHI9 (COG0384), RVT-UG2, PRK06333 (beta-ketoacyl-ACP synthase), HxlR (pfam01638)

Seq: QVAY02000005.1 Pseudomonas aeruginosa strain PABL098 NODE_5_length_141848_cov_67.7169, whole genome shotgun sequence (141848 bp)
Overview 1 RT 1: 43090-53396 bp 2 RT 2: 69655-78514 bp Neighborhood of RT #1 [43090, 53398] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [69655, 78543] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 43090-44211 bp Feature: domain Description: COG3177 Location: 43108-44200 bp Feature: domain Description: COG3177 Location: 43108-442 00 bp Feature: gene Location: 44470-44607 bp Feature: gene Location: 44935-46620 bp Feature: domain Description: RVT_N Location: 44992-45232 bp Feature: domain Description: RVT_N Location: 44992 -452 32 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45280-45916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 452 80-45916 bp Feature: domain Description: GIIM Note: maturase Location: 45970-46201 bp Feature: domain Description: GIIM Note: maturase Location: 45970-462 01 bp Feature: domain Description: HNH Note: nucleases Location: 46453-46591 bp Feature: domain Description: HNH Note: nucleases Location: 46453-46591 bp Feature: gene Location: 47701-51438 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 47809-48466 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 47809-48466 bp Feature: domain Description: PRK09776 Location: 48679-49150 bp Feature: domain Description: PRK09776 Location: 48679-49150 bp Feature: domain Description: PAS Location: 49222-49732 bp Feature: domain Description: PAS Location: 492 2 2 -49732 bp Feature: domain Description: PRK10060 Location: 49741-51388 bp Feature: domain Description: PRK10060 Location: 49741-51388 bp Feature: gene Location: 51545-53398 bp Feature: domain Description: PRK05658 Location: 51557-53396 bp Feature: domain Description: PRK05658 Location: 51557-53396 bp Feature: gene Location: 69655-70869 bp Feature: domain Description: PRK10770 Location: 69667-70861 bp Feature: domain Description: PRK10770 Location: 69667-70861 bp Feature: gene Location: 70928-73738 bp Feature: domain Description: LptD Location: 71123-73724 bp Feature: domain Description: LptD Location: 7112 3-7372 4 bp Feature: gene Location: 73871-75583 bp Feature: domain Description: RVT_N Location: 73928-74171 bp Feature: domain Description: RVT_N Location: 7392 8-74171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74216-74852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742 16-74852 bp Feature: domain Description: YkfC Location: 75062-75212 bp Feature: domain Description: YkfC Location: 75062 -752 12 bp Feature: domain Description: HNH Note: nucleases Location: 75389-75527 bp Feature: domain Description: HNH Note: nucleases Location: 75389-7552 7 bp Feature: gene Location: 76856-77872 bp Feature: domain Description: COG3178 Location: 76859-77858 bp Feature: domain Description: COG3178 Location: 76859-77858 bp Feature: gene Location: 77869-78543 bp Feature: domain Description: NTP_transferase_like_1 Location: 77875-78514 bp Feature: domain Description: NTP_transferase_like_1 Location: 77875-78514 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)